Gene annotation
Transcriptome id Sobic.010G085900.1
Synonym Sb10g007440
Functional annotation PPR repeat containing protein, expressed
UniProt C5Z6V3
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF609
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G18475 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g26890.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a042528
Brachypodium KQK18990 , PNT76210
Barley HORVU7Hr1G036170.4 , HORVU7Hr1G036170.5 , HORVU7Hr1G036170.6 , HORVU7Hr1G036170.7 , HORVU7Hr1G036170.1 , HORVU7Hr1G036170.2 , HORVU7Hr1G036170.3 , HORVU7Hr1G036170.8
Wheat TraesCS7A02G175500 , TraesCS7B02G080900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G198701 - -
3 Sobic.001G267266 - -
4 Sobic.005G097700 - -
5 Sobic.006G228400 kinase, putative, expressed -
6 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
7 Sobic.001G049000 OsFBD9 - F-box and FBD domain containing protein, expressed -
8 Sobic.001G021800 mRNA-decapping enzyme, putative, expressed K12611: mRNA-decapping enzyme 1B
9 Sobic.002G210100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed K08900: mitochondrial chaperone BCS1
10 Sobic.002G120200 pentatricopeptide, putative, expressed -
11 Sobic.003G423100 NAM, putative, expressed -
12 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
13 Sobic.003G357000 - -
14 Sobic.002G004400 expressed protein -
15 Sobic.009G229100 expressed protein -
16 Sobic.002G034400 expressed protein -
17 Sobic.006G090201 - -
18 Sobic.003G047300 phototropic-responsive NPH3 family protein, putative, expressed -
19 Sobic.003G343100 expressed protein -
20 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -


Gene co-expression network
sample Sobic010G085900 Sobic010G085900 Sobic004G356600 Sobic004G356600 Sobic010G085900--Sobic004G356600 Sobic003G198701 Sobic003G198701 Sobic010G085900--Sobic003G198701 Sobic001G267266 Sobic001G267266 Sobic010G085900--Sobic001G267266 Sobic005G097700 Sobic005G097700 Sobic010G085900--Sobic005G097700 Sobic006G228400 Sobic006G228400 Sobic010G085900--Sobic006G228400 Sobic009G070000 Sobic009G070000 Sobic010G085900--Sobic009G070000 Sobic001G049000 Sobic001G049000 Sobic010G085900--Sobic001G049000 Sobic001G021800 Sobic001G021800 Sobic010G085900--Sobic001G021800 Sobic002G210100 Sobic002G210100 Sobic010G085900--Sobic002G210100 Sobic006G090201 Sobic006G090201 Sobic004G356600--Sobic006G090201 Sobic007G072901 Sobic007G072901 Sobic004G356600--Sobic007G072901 Sobic009G010800 Sobic009G010800 Sobic004G356600--Sobic009G010800 Sobic001G361500 Sobic001G361500 Sobic004G356600--Sobic001G361500 Sobic003G423100 Sobic003G423100 Sobic004G356600--Sobic003G423100 Sobic003G357000 Sobic003G357000 Sobic004G356600--Sobic003G357000 Sobic009G164200 Sobic009G164200 Sobic004G356600--Sobic009G164200 Sobic006G185400 Sobic006G185400 Sobic004G356600--Sobic006G185400 Sobic003G245700 Sobic003G245700 Sobic004G356600--Sobic003G245700 Sobic004G325766 Sobic004G325766 Sobic003G198701--Sobic004G325766 Sobic005G106800 Sobic005G106800 Sobic003G198701--Sobic005G106800 Sobic003G299400 Sobic003G299400 Sobic003G198701--Sobic003G299400 Sobic003G198701--Sobic003G423100 Sobic007G056400 Sobic007G056400 Sobic003G198701--Sobic007G056400 Sobic003G198701--Sobic007G072901 Sobic003G045800 Sobic003G045800 Sobic003G198701--Sobic003G045800 Sobic003G198701--Sobic003G357000 Sobic007G152200 Sobic007G152200 Sobic003G198701--Sobic007G152200 Sobic002G302100 Sobic002G302100 Sobic001G267266--Sobic002G302100 Sobic001G267266--Sobic001G049000 Sobic002G004400 Sobic002G004400 Sobic001G267266--Sobic002G004400 Sobic006G053800 Sobic006G053800 Sobic001G267266--Sobic006G053800 Sobic001G267266--Sobic004G356600 Sobic002G034400 Sobic002G034400 Sobic001G267266--Sobic002G034400 Sobic001G267266--Sobic005G097700 Sobic003G221300 Sobic003G221300 Sobic001G267266--Sobic003G221300 Sobic001G267266--Sobic006G228400 Sobic002G175550 Sobic002G175550 Sobic005G097700--Sobic002G175550 Sobic005G097700--Sobic004G356600 Sobic005G097700--Sobic002G004400 Sobic005G097700--Sobic006G090201 Sobic007G210400 Sobic007G210400 Sobic005G097700--Sobic007G210400 Sobic005G097700--Sobic007G072901 Sobic005G097700--Sobic003G357000 Sobic005G097700--Sobic002G034400 Sobic005G097700--Sobic006G228400 Sobic006G228400--Sobic002G004400 Sobic003G288900 Sobic003G288900 Sobic006G228400--Sobic003G288900 Sobic006G228400--Sobic006G090201 Sobic006G228400--Sobic007G072901 Sobic002G205201 Sobic002G205201 Sobic006G228400--Sobic002G205201 Sobic001G172900 Sobic001G172900 Sobic006G228400--Sobic001G172900 Sobic008G023500 Sobic008G023500 Sobic006G228400--Sobic008G023500 Sobic010G275550 Sobic010G275550 Sobic006G228400--Sobic010G275550 Sobic004G330500 Sobic004G330500 Sobic006G228400--Sobic004G330500 Sobic006G271100 Sobic006G271100 Sobic009G070000--Sobic006G271100 Sobic003G047300 Sobic003G047300 Sobic009G070000--Sobic003G047300 Sobic009G229100 Sobic009G229100 Sobic009G070000--Sobic009G229100 Sobic005G111600 Sobic005G111600 Sobic009G070000--Sobic005G111600 Sobic003G364700 Sobic003G364700 Sobic009G070000--Sobic003G364700 Sobic004G049800 Sobic004G049800 Sobic009G070000--Sobic004G049800 Sobic006G228100 Sobic006G228100 Sobic009G070000--Sobic006G228100 Sobic009G070000--Sobic001G049000 Sobic001G511200 Sobic001G511200 Sobic009G070000--Sobic001G511200 Sobic001G378550 Sobic001G378550 Sobic001G049000--Sobic001G378550 Sobic003G343100 Sobic003G343100 Sobic001G049000--Sobic003G343100 Sobic008G078600 Sobic008G078600 Sobic001G049000--Sobic008G078600 Sobic001G049000--Sobic002G004400 Sobic001G049000--Sobic007G210400 Sobic001G049000--Sobic006G090201 Sobic010G014600 Sobic010G014600 Sobic001G049000--Sobic010G014600 Sobic005G189400 Sobic005G189400 Sobic001G049000--Sobic005G189400 Sobic001G049000--Sobic007G072901 Sobic001G128900 Sobic001G128900 Sobic001G021800--Sobic001G128900 Sobic001G206800 Sobic001G206800 Sobic001G021800--Sobic001G206800 Sobic008G127600 Sobic008G127600 Sobic001G021800--Sobic008G127600 Sobic004G098200 Sobic004G098200 Sobic001G021800--Sobic004G098200 Sobic010G096801 Sobic010G096801 Sobic001G021800--Sobic010G096801 Sobic001G021800--Sobic003G357000 Sobic009G004000 Sobic009G004000 Sobic001G021800--Sobic009G004000 Sobic004G051800 Sobic004G051800 Sobic001G021800--Sobic004G051800 Sobic004G199000 Sobic004G199000 Sobic001G021800--Sobic004G199000 Sobic006G166300 Sobic006G166300 Sobic002G210100--Sobic006G166300 Sobic002G210100--Sobic006G228400 Sobic001G004000 Sobic001G004000 Sobic002G210100--Sobic001G004000 Sobic005G232200 Sobic005G232200 Sobic002G210100--Sobic005G232200 Sobic002G210100--Sobic005G097700 Sobic002G210100--Sobic010G096801 Sobic001G396300 Sobic001G396300 Sobic002G210100--Sobic001G396300 Sobic002G210100--Sobic003G198701 Sobic002G210100--Sobic004G098200
Octagon: transcription factors


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