Gene annotation
Transcriptome id Sobic.002G210100.1
Synonym Sb02g025400
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
AAA-type ATPase family protein, putative, expressed
UniProt C5XDJ9
Pfam PF00004 PF14363
Panther DB PTHR23070 PTHR23070:SF17
NCBI CDD -
KEGG Orthology K08900; mitochondrial chaperone BCS1
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G57480 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g26260.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a047104 , Zm00025a004879 , Zm00025a010901
Brachypodium KQK15975 , KQJ90344
Barley HORVU2Hr1G046240.1 , HORVU2Hr1G046240.2 , HORVU2Hr1G046240.3 , HORVU2Hr1G046310.2 , HORVU2Hr1G046310.3 , HORVU5Hr1G063340.3 , HORVU5Hr1G063340.2 , HORVU5Hr1G063340.1
Wheat TraesCS2B02G247000 , TraesCS2A02G221700 , TraesCS2D02G227400 , TraesCS2A02G221500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G166300 WRKY36, expressed -
2 Sobic.006G228400 kinase, putative, expressed -
3 Sobic.001G004000 avr9/Cf-9 rapidly elicited protein, putative, expressed -
4 Sobic.005G232200 expressed protein -
5 Sobic.005G097700 - -
6 Sobic.010G096801 - -
7 Sobic.001G396300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Protein CP12-2 (Os)(PubMedID : 27208977)@calvin cycle protein CP12, putative, expressed -
8 Sobic.003G198701 - -
9 Sobic.004G098200 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.004G327500 hydrolase, NUDIX family, domain containing protein, expressed -
11 Sobic.001G410800 OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed K10878: meiotic recombination protein SPO11
12 Sobic.001G139600 - -
13 Sobic.004G357066 - -
14 Sobic.001G206800 - -
15 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G199000 expressed protein -
17 Sobic.002G218200 protein kinase domain containing protein, expressed -
18 Sobic.003G357000 - -
19 Sobic.007G072901 - -
20 Sobic.001G261553 - -


Gene co-expression network
sample Sobic002G210100 Sobic002G210100 Sobic006G166300 Sobic006G166300 Sobic002G210100--Sobic006G166300 Sobic006G228400 Sobic006G228400 Sobic002G210100--Sobic006G228400 Sobic001G004000 Sobic001G004000 Sobic002G210100--Sobic001G004000 Sobic005G232200 Sobic005G232200 Sobic002G210100--Sobic005G232200 Sobic005G097700 Sobic005G097700 Sobic002G210100--Sobic005G097700 Sobic010G096801 Sobic010G096801 Sobic002G210100--Sobic010G096801 Sobic001G396300 Sobic001G396300 Sobic002G210100--Sobic001G396300 Sobic003G198701 Sobic003G198701 Sobic002G210100--Sobic003G198701 Sobic004G098200 Sobic004G098200 Sobic002G210100--Sobic004G098200 Sobic003G423100 Sobic003G423100 Sobic006G166300--Sobic003G423100 Sobic003G178200 Sobic003G178200 Sobic006G166300--Sobic003G178200 Sobic003G245700 Sobic003G245700 Sobic006G166300--Sobic003G245700 Sobic007G072901 Sobic007G072901 Sobic006G166300--Sobic007G072901 Sobic002G037000 Sobic002G037000 Sobic006G166300--Sobic002G037000 Sobic005G037500 Sobic005G037500 Sobic006G166300--Sobic005G037500 Sobic007G210400 Sobic007G210400 Sobic006G166300--Sobic007G210400 Sobic006G090201 Sobic006G090201 Sobic006G166300--Sobic006G090201 Sobic005G189400 Sobic005G189400 Sobic006G166300--Sobic005G189400 Sobic002G004400 Sobic002G004400 Sobic006G228400--Sobic002G004400 Sobic003G288900 Sobic003G288900 Sobic006G228400--Sobic003G288900 Sobic006G228400--Sobic006G090201 Sobic006G228400--Sobic007G072901 Sobic002G205201 Sobic002G205201 Sobic006G228400--Sobic002G205201 Sobic001G172900 Sobic001G172900 Sobic006G228400--Sobic001G172900 Sobic008G023500 Sobic008G023500 Sobic006G228400--Sobic008G023500 Sobic010G275550 Sobic010G275550 Sobic006G228400--Sobic010G275550 Sobic004G330500 Sobic004G330500 Sobic006G228400--Sobic004G330500 Sobic004G275500 Sobic004G275500 Sobic001G004000--Sobic004G275500 Sobic007G224600 Sobic007G224600 Sobic001G004000--Sobic007G224600 Sobic006G065700 Sobic006G065700 Sobic001G004000--Sobic006G065700 Sobic001G519300 Sobic001G519300 Sobic001G004000--Sobic001G519300 Sobic002G284901 Sobic002G284901 Sobic001G004000--Sobic002G284901 Sobic002G320900 Sobic002G320900 Sobic001G004000--Sobic002G320900 Sobic001G115800 Sobic001G115800 Sobic001G004000--Sobic001G115800 Sobic003G120400 Sobic003G120400 Sobic001G004000--Sobic003G120400 Sobic009G198400 Sobic009G198400 Sobic001G004000--Sobic009G198400 Sobic001G139600 Sobic001G139600 Sobic005G232200--Sobic001G139600 Sobic002G140100 Sobic002G140100 Sobic005G232200--Sobic002G140100 Sobic010G206700 Sobic010G206700 Sobic005G232200--Sobic010G206700 Sobic002G218200 Sobic002G218200 Sobic005G232200--Sobic002G218200 Sobic004G357066 Sobic004G357066 Sobic005G232200--Sobic004G357066 Sobic006G227800 Sobic006G227800 Sobic005G232200--Sobic006G227800 Sobic001G410800 Sobic001G410800 Sobic005G232200--Sobic001G410800 Sobic010G158100 Sobic010G158100 Sobic005G232200--Sobic010G158100 Sobic001G261553 Sobic001G261553 Sobic005G232200--Sobic001G261553 Sobic002G175550 Sobic002G175550 Sobic005G097700--Sobic002G175550 Sobic004G356600 Sobic004G356600 Sobic005G097700--Sobic004G356600 Sobic005G097700--Sobic002G004400 Sobic005G097700--Sobic006G090201 Sobic005G097700--Sobic007G210400 Sobic005G097700--Sobic007G072901 Sobic003G357000 Sobic003G357000 Sobic005G097700--Sobic003G357000 Sobic002G034400 Sobic002G034400 Sobic005G097700--Sobic002G034400 Sobic005G097700--Sobic006G228400 Sobic010G096801--Sobic004G357066 Sobic001G220200 Sobic001G220200 Sobic010G096801--Sobic001G220200 Sobic001G206800 Sobic001G206800 Sobic010G096801--Sobic001G206800 Sobic010G096801--Sobic001G410800 Sobic010G096801--Sobic001G261553 Sobic004G357033 Sobic004G357033 Sobic010G096801--Sobic004G357033 Sobic010G158766 Sobic010G158766 Sobic010G096801--Sobic010G158766 Sobic010G096801--Sobic001G139600 Sobic010G096801--Sobic002G218200 Sobic004G320300 Sobic004G320300 Sobic001G396300--Sobic004G320300 Sobic001G186925 Sobic001G186925 Sobic001G396300--Sobic001G186925 Sobic001G396300--Sobic006G065700 Sobic001G441800 Sobic001G441800 Sobic001G396300--Sobic001G441800 Sobic002G387100 Sobic002G387100 Sobic001G396300--Sobic002G387100 Sobic002G430200 Sobic002G430200 Sobic001G396300--Sobic002G430200 Sobic001G396300--Sobic001G004000 Sobic001G525000 Sobic001G525000 Sobic001G396300--Sobic001G525000 Sobic001G396300--Sobic009G198400 Sobic004G325766 Sobic004G325766 Sobic003G198701--Sobic004G325766 Sobic005G106800 Sobic005G106800 Sobic003G198701--Sobic005G106800 Sobic003G299400 Sobic003G299400 Sobic003G198701--Sobic003G299400 Sobic003G198701--Sobic003G423100 Sobic007G056400 Sobic007G056400 Sobic003G198701--Sobic007G056400 Sobic003G198701--Sobic007G072901 Sobic003G045800 Sobic003G045800 Sobic003G198701--Sobic003G045800 Sobic003G198701--Sobic003G357000 Sobic007G152200 Sobic007G152200 Sobic003G198701--Sobic007G152200 Sobic004G098200--Sobic003G357000 Sobic004G098200--Sobic002G037000 Sobic004G098200--Sobic008G023500 Sobic001G019100 Sobic001G019100 Sobic004G098200--Sobic001G019100 Sobic004G098200--Sobic003G045800 Sobic004G098200--Sobic001G172900 Sobic009G164200 Sobic009G164200 Sobic004G098200--Sobic009G164200 Sobic009G010800 Sobic009G010800 Sobic004G098200--Sobic009G010800 Sobic004G098200--Sobic005G037500
Octagon: transcription factors


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