Gene annotation
Transcriptome id Sobic.001G396300.1
Synonym CP12-1, Sb01g037510, CP12
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Protein CP12-2 (Os) (PubMedID : 27208977)
calvin cycle protein CP12, putative, expressed
UniProt C5WMH4
Pfam PF02672
Panther DB PTHR33921 PTHR33921:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G47400 : CP12 domain-containing protein 1
RAP-DB (Rice) LOC_Os03g19380.1 : calvin cycle protein CP12, putative, expressed
MaizeGDB (Corn) Zm00025a000408 , Zm00025a002129 , Zm00025a049568
Brachypodium KQK22012
Barley HORVU2Hr1G005150.3 , HORVU2Hr1G005150.4 , HORVU4Hr1G053940.3 , HORVU4Hr1G053940.2 , HORVU4Hr1G053940.1 , HORVU4Hr1G053940.5 , HORVU4Hr1G053940.4
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G320300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.001G186925 - -
3 Sobic.006G065700 DUF677 domain containing protein, putative, expressed -
4 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
5 Sobic.002G387100 X8 domain containing protein, expressed -
6 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
7 Sobic.001G004000 avr9/Cf-9 rapidly elicited protein, putative, expressed -
8 Sobic.001G525000 polygalacturonase, putative, expressed -
9 Sobic.009G198400 protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1
10 Sobic.007G122300 - -
11 Sobic.003G120400 expressed protein -
12 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
13 Sobic.002G284901 - -
14 Sobic.010G201000 - -
15 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
16 Sobic.003G367401 - -
17 Sobic.007G093400 - -
18 Sobic.003G099500 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
19 Sobic.003G092200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
20 Sobic.002G284800 expressed protein -


Gene co-expression network
sample Sobic001G396300 Sobic001G396300 Sobic004G320300 Sobic004G320300 Sobic001G396300--Sobic004G320300 Sobic001G186925 Sobic001G186925 Sobic001G396300--Sobic001G186925 Sobic006G065700 Sobic006G065700 Sobic001G396300--Sobic006G065700 Sobic001G441800 Sobic001G441800 Sobic001G396300--Sobic001G441800 Sobic002G387100 Sobic002G387100 Sobic001G396300--Sobic002G387100 Sobic002G430200 Sobic002G430200 Sobic001G396300--Sobic002G430200 Sobic001G004000 Sobic001G004000 Sobic001G396300--Sobic001G004000 Sobic001G525000 Sobic001G525000 Sobic001G396300--Sobic001G525000 Sobic009G198400 Sobic009G198400 Sobic001G396300--Sobic009G198400 Sobic001G200500 Sobic001G200500 Sobic004G320300--Sobic001G200500 Sobic009G031100 Sobic009G031100 Sobic004G320300--Sobic009G031100 Sobic002G156300 Sobic002G156300 Sobic004G320300--Sobic002G156300 Sobic003G109400 Sobic003G109400 Sobic004G320300--Sobic003G109400 Sobic007G001300 Sobic007G001300 Sobic004G320300--Sobic007G001300 Sobic010G224800 Sobic010G224800 Sobic004G320300--Sobic010G224800 Sobic010G114400 Sobic010G114400 Sobic004G320300--Sobic010G114400 Sobic003G201400 Sobic003G201400 Sobic004G320300--Sobic003G201400 Sobic002G206200 Sobic002G206200 Sobic004G320300--Sobic002G206200 Sobic009G031300 Sobic009G031300 Sobic001G186925--Sobic009G031300 Sobic002G396900 Sobic002G396900 Sobic001G186925--Sobic002G396900 Sobic004G354800 Sobic004G354800 Sobic001G186925--Sobic004G354800 Sobic002G231800 Sobic002G231800 Sobic001G186925--Sobic002G231800 Sobic010G200800 Sobic010G200800 Sobic001G186925--Sobic010G200800 Sobic001G120100 Sobic001G120100 Sobic001G186925--Sobic001G120100 Sobic005G076100 Sobic005G076100 Sobic001G186925--Sobic005G076100 Sobic003G149900 Sobic003G149900 Sobic001G186925--Sobic003G149900 Sobic001G537900 Sobic001G537900 Sobic001G186925--Sobic001G537900 Sobic002G320900 Sobic002G320900 Sobic006G065700--Sobic002G320900 Sobic002G284901 Sobic002G284901 Sobic006G065700--Sobic002G284901 Sobic007G093400 Sobic007G093400 Sobic006G065700--Sobic007G093400 Sobic002G210200 Sobic002G210200 Sobic006G065700--Sobic002G210200 Sobic003G200501 Sobic003G200501 Sobic006G065700--Sobic003G200501 Sobic003G120400 Sobic003G120400 Sobic006G065700--Sobic003G120400 Sobic006G065700--Sobic001G525000 Sobic010G074980 Sobic010G074980 Sobic006G065700--Sobic010G074980 Sobic003G427500 Sobic003G427500 Sobic006G065700--Sobic003G427500 Sobic003G368150 Sobic003G368150 Sobic001G441800--Sobic003G368150 Sobic001G441800--Sobic002G387100 Sobic007G122300 Sobic007G122300 Sobic001G441800--Sobic007G122300 Sobic002G284800 Sobic002G284800 Sobic001G441800--Sobic002G284800 Sobic001G441800--Sobic002G430200 Sobic008G133100 Sobic008G133100 Sobic001G441800--Sobic008G133100 Sobic004G239000 Sobic004G239000 Sobic001G441800--Sobic004G239000 Sobic003G099500 Sobic003G099500 Sobic001G441800--Sobic003G099500 Sobic001G255700 Sobic001G255700 Sobic001G441800--Sobic001G255700 Sobic002G387100--Sobic002G430200 Sobic002G387100--Sobic007G122300 Sobic002G387100--Sobic003G099500 Sobic002G387100--Sobic004G239000 Sobic002G387100--Sobic001G525000 Sobic003G367401 Sobic003G367401 Sobic002G387100--Sobic003G367401 Sobic002G387100--Sobic002G284800 Sobic002G387100--Sobic003G368150 Sobic002G387100--Sobic003G120400 Sobic002G430200--Sobic002G387100 Sobic002G430200--Sobic007G122300 Sobic002G430200--Sobic003G099500 Sobic002G430200--Sobic003G367401 Sobic002G430200--Sobic001G525000 Sobic002G430200--Sobic004G239000 Sobic002G430200--Sobic003G120400 Sobic010G201000 Sobic010G201000 Sobic002G430200--Sobic010G201000 Sobic002G430200--Sobic002G284800 Sobic004G275500 Sobic004G275500 Sobic001G004000--Sobic004G275500 Sobic007G224600 Sobic007G224600 Sobic001G004000--Sobic007G224600 Sobic001G004000--Sobic006G065700 Sobic001G519300 Sobic001G519300 Sobic001G004000--Sobic001G519300 Sobic001G004000--Sobic002G284901 Sobic001G004000--Sobic002G320900 Sobic001G115800 Sobic001G115800 Sobic001G004000--Sobic001G115800 Sobic001G004000--Sobic003G120400 Sobic001G004000--Sobic009G198400 Sobic001G525000--Sobic003G120400 Sobic001G525000--Sobic002G320900 Sobic001G525000--Sobic002G430200 Sobic001G525000--Sobic002G284901 Sobic001G525000--Sobic003G367401 Sobic001G525000--Sobic002G387100 Sobic001G525000--Sobic002G210200 Sobic001G525000--Sobic003G200501 Sobic001G525000--Sobic007G093400 Sobic007G175701 Sobic007G175701 Sobic009G198400--Sobic007G175701 Sobic001G130900 Sobic001G130900 Sobic009G198400--Sobic001G130900 Sobic009G198400--Sobic007G093400 Sobic009G198400--Sobic003G367401 Sobic001G213400 Sobic001G213400 Sobic009G198400--Sobic001G213400 Sobic003G065001 Sobic003G065001 Sobic009G198400--Sobic003G065001 Sobic001G115900 Sobic001G115900 Sobic009G198400--Sobic001G115900 Sobic009G198400--Sobic003G120400 Sobic003G126400 Sobic003G126400 Sobic009G198400--Sobic003G126400
Octagon: transcription factors


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