Gene annotation
Transcriptome id Sobic.001G362400.2
Synonym Sb01g034600
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1Z5S9F6
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF636
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G18950 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g24880.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a002595
Brachypodium -
Barley HORVU4Hr1G045500.10 , HORVU4Hr1G045500.1 , HORVU4Hr1G045500.2 , HORVU4Hr1G045500.3 , HORVU4Hr1G045500.4 , HORVU4Hr1G045500.5 , HORVU4Hr1G045500.6 , HORVU4Hr1G045500.7 , HORVU4Hr1G045500.8 , HORVU4Hr1G045500.9
Wheat TraesCS4D02G162800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G034400 expressed protein -
2 Sobic.002G120200 pentatricopeptide, putative, expressed -
3 Sobic.007G043200 (31.4% identity with SbCCoAOMT/43.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed -
4 Sobic.003G222400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
5 Sobic.001G419900 Up-reguralion under heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
6 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
7 Sobic.002G200500 pentatricopeptide, putative, expressed -
8 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
10 Sobic.009G070900 - -
11 Sobic.002G052500 - -
12 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
13 Sobic.006G272450 - -
14 Sobic.008G168000 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
15 Sobic.001G042400 expressed protein -
16 Sobic.004G357900 GHMP kinases ATP-binding protein, putative, expressed K00872: homoserine kinase
17 Sobic.003G264000 cytidylyltransferase domain containing protein, expressed -
18 Sobic.003G051800 expressed protein K03024: RPC7, DNA-directed RNA polymerase III subunit RPC7
19 Sobic.010G256433 - -
20 Sobic.003G219400 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3


Gene co-expression network
sample Sobic001G362400 Sobic001G362400 Sobic002G034400 Sobic002G034400 Sobic001G362400--Sobic002G034400 Sobic002G120200 Sobic002G120200 Sobic001G362400--Sobic002G120200 Sobic007G043200 Sobic007G043200 Sobic001G362400--Sobic007G043200 Sobic003G222400 Sobic003G222400 Sobic001G362400--Sobic003G222400 Sobic001G419900 Sobic001G419900 Sobic001G362400--Sobic001G419900 Sobic001G134600 Sobic001G134600 Sobic001G362400--Sobic001G134600 Sobic002G200500 Sobic002G200500 Sobic001G362400--Sobic002G200500 Sobic004G356600 Sobic004G356600 Sobic001G362400--Sobic004G356600 Sobic006G146900 Sobic006G146900 Sobic001G362400--Sobic006G146900 Sobic002G034400--Sobic004G356600 Sobic005G097700 Sobic005G097700 Sobic002G034400--Sobic005G097700 Sobic002G356700 Sobic002G356700 Sobic002G034400--Sobic002G356700 Sobic006G228400 Sobic006G228400 Sobic002G034400--Sobic006G228400 Sobic002G052500 Sobic002G052500 Sobic002G034400--Sobic002G052500 Sobic006G090201 Sobic006G090201 Sobic002G034400--Sobic006G090201 Sobic006G260600 Sobic006G260600 Sobic002G034400--Sobic006G260600 Sobic002G004400 Sobic002G004400 Sobic002G034400--Sobic002G004400 Sobic003G245700 Sobic003G245700 Sobic002G034400--Sobic003G245700 Sobic002G120200--Sobic006G146900 Sobic002G120200--Sobic002G034400 Sobic002G120200--Sobic006G260600 Sobic001G451200 Sobic001G451200 Sobic002G120200--Sobic001G451200 Sobic002G120200--Sobic002G200500 Sobic002G120200--Sobic004G356600 Sobic009G233600 Sobic009G233600 Sobic002G120200--Sobic009G233600 Sobic006G073150 Sobic006G073150 Sobic002G120200--Sobic006G073150 Sobic006G271100 Sobic006G271100 Sobic002G120200--Sobic006G271100 Sobic007G138300 Sobic007G138300 Sobic007G043200--Sobic007G138300 Sobic007G043200--Sobic001G134600 Sobic008G168000 Sobic008G168000 Sobic007G043200--Sobic008G168000 Sobic007G033200 Sobic007G033200 Sobic007G043200--Sobic007G033200 Sobic007G043200--Sobic001G362400 Sobic007G043200--Sobic001G419900 Sobic003G264000 Sobic003G264000 Sobic007G043200--Sobic003G264000 Sobic001G418650 Sobic001G418650 Sobic007G043200--Sobic001G418650 Sobic002G364000 Sobic002G364000 Sobic007G043200--Sobic002G364000 Sobic006G272450 Sobic006G272450 Sobic003G222400--Sobic006G272450 Sobic003G222400--Sobic002G356700 Sobic009G070900 Sobic009G070900 Sobic003G222400--Sobic009G070900 Sobic001G042400 Sobic001G042400 Sobic003G222400--Sobic001G042400 Sobic010G256433 Sobic010G256433 Sobic003G222400--Sobic010G256433 Sobic007G085350 Sobic007G085350 Sobic003G222400--Sobic007G085350 Sobic003G222400--Sobic009G233600 Sobic003G222400--Sobic004G356600 Sobic003G222400--Sobic002G034400 Sobic001G419900--Sobic001G134600 Sobic001G419900--Sobic002G034400 Sobic001G419900--Sobic005G097700 Sobic001G419900--Sobic002G052500 Sobic001G419900--Sobic004G356600 Sobic001G378550 Sobic001G378550 Sobic001G419900--Sobic001G378550 Sobic001G419900--Sobic006G090201 Sobic001G419900--Sobic009G070900 Sobic002G175550 Sobic002G175550 Sobic001G419900--Sobic002G175550 Sobic001G134600--Sobic001G378550 Sobic001G134600--Sobic002G052500 Sobic001G134600--Sobic001G419900 Sobic001G049000 Sobic001G049000 Sobic001G134600--Sobic001G049000 Sobic001G134600--Sobic004G356600 Sobic001G267266 Sobic001G267266 Sobic001G134600--Sobic001G267266 Sobic001G134600--Sobic006G090201 Sobic003G343100 Sobic003G343100 Sobic001G134600--Sobic003G343100 Sobic001G063900 Sobic001G063900 Sobic001G134600--Sobic001G063900 Sobic002G200500--Sobic006G146900 Sobic002G200500--Sobic002G120200 Sobic002G200500--Sobic001G362400 Sobic002G200500--Sobic003G222400 Sobic006G240300 Sobic006G240300 Sobic002G200500--Sobic006G240300 Sobic004G339000 Sobic004G339000 Sobic002G200500--Sobic004G339000 Sobic010G018800 Sobic010G018800 Sobic002G200500--Sobic010G018800 Sobic002G200500--Sobic010G256433 Sobic002G200500--Sobic002G034400 Sobic004G356600--Sobic006G090201 Sobic007G072901 Sobic007G072901 Sobic004G356600--Sobic007G072901 Sobic009G010800 Sobic009G010800 Sobic004G356600--Sobic009G010800 Sobic001G361500 Sobic001G361500 Sobic004G356600--Sobic001G361500 Sobic003G423100 Sobic003G423100 Sobic004G356600--Sobic003G423100 Sobic003G357000 Sobic003G357000 Sobic004G356600--Sobic003G357000 Sobic009G164200 Sobic009G164200 Sobic004G356600--Sobic009G164200 Sobic006G185400 Sobic006G185400 Sobic004G356600--Sobic006G185400 Sobic004G356600--Sobic003G245700 Sobic006G146900--Sobic002G120200 Sobic006G146900--Sobic002G200500 Sobic002G237700 Sobic002G237700 Sobic006G146900--Sobic002G237700 Sobic006G146900--Sobic006G240300 Sobic003G182100 Sobic003G182100 Sobic006G146900--Sobic003G182100 Sobic001G404000 Sobic001G404000 Sobic006G146900--Sobic001G404000 Sobic006G146900--Sobic001G362400 Sobic001G193900 Sobic001G193900 Sobic006G146900--Sobic001G193900 Sobic006G146900--Sobic009G233600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.