Gene annotation
Transcriptome id Sobic.004G357900.1
Synonym DMR1, HSK, Sb04g038440
Functional annotation GHMP kinases ATP-binding protein, putative, expressed
UniProt A0A097PKA9 , C5XWS4
Pfam PF00288 PF08544
Panther DB PTHR20861 PTHR20861:SF1
NCBI CDD KOG1537; Homoserine kinase
KEGG Orthology K00872; homoserine kinase
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G17265 : homoserine kinase
RAP-DB (Rice) LOC_Os02g58510.1 : GHMP kinases ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a022681
Brachypodium KQK02171
Barley HORVU6Hr1G094950.2 , HORVU6Hr1G094950.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G357900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G086401 - -
2 Sobic.006G212000 PPR repeat domain containing protein, putative, expressed -
3 Sobic.002G120200 pentatricopeptide, putative, expressed -
4 Sobic.001G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
5 Sobic.001G362400 PPR repeat containing protein, expressed -
6 Sobic.003G022800 ribosomal protein L23 family protein, putative, expressed K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
7 Sobic.010G153532 - -
8 Sobic.003G219400 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
9 Sobic.005G112632 - -
10 Sobic.009G058800 expressed protein -
11 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G023666 - -
13 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
14 Sobic.001G419900 Up-reguralion under heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
15 Sobic.005G097700 - -
16 Sobic.003G184500 carboxyl-terminal peptidase, putative, expressed -
17 Sobic.006G073150 - -
18 Sobic.003G041300 frigida, putative, expressed -
19 Sobic.002G034400 expressed protein -
20 Sobic.001G430000 basic helix-loop-helix, putative, expressed -


Gene co-expression network
sample Sobic004G357900 Sobic004G357900 Sobic008G086401 Sobic008G086401 Sobic004G357900--Sobic008G086401 Sobic006G212000 Sobic006G212000 Sobic004G357900--Sobic006G212000 Sobic002G120200 Sobic002G120200 Sobic004G357900--Sobic002G120200 Sobic001G256900 Sobic001G256900 Sobic004G357900--Sobic001G256900 Sobic001G362400 Sobic001G362400 Sobic004G357900--Sobic001G362400 Sobic003G022800 Sobic003G022800 Sobic004G357900--Sobic003G022800 Sobic010G153532 Sobic010G153532 Sobic004G357900--Sobic010G153532 Sobic003G219400 Sobic003G219400 Sobic004G357900--Sobic003G219400 Sobic005G112632 Sobic005G112632 Sobic004G357900--Sobic005G112632 Sobic008G086401--Sobic003G022800 Sobic008G086401--Sobic006G212000 Sobic008G086401--Sobic004G357900 Sobic004G356600 Sobic004G356600 Sobic008G086401--Sobic004G356600 Sobic005G097700 Sobic005G097700 Sobic008G086401--Sobic005G097700 Sobic008G086401--Sobic001G256900 Sobic003G222400 Sobic003G222400 Sobic008G086401--Sobic003G222400 Sobic009G070900 Sobic009G070900 Sobic008G086401--Sobic009G070900 Sobic007G169000 Sobic007G169000 Sobic008G086401--Sobic007G169000 Sobic006G212000--Sobic008G086401 Sobic002G293900 Sobic002G293900 Sobic006G212000--Sobic002G293900 Sobic006G212000--Sobic003G222400 Sobic006G212000--Sobic004G357900 Sobic006G212000--Sobic002G120200 Sobic006G212000--Sobic004G356600 Sobic002G034400 Sobic002G034400 Sobic006G212000--Sobic002G034400 Sobic006G212000--Sobic003G022800 Sobic003G365400 Sobic003G365400 Sobic006G212000--Sobic003G365400 Sobic006G146900 Sobic006G146900 Sobic002G120200--Sobic006G146900 Sobic002G120200--Sobic002G034400 Sobic006G260600 Sobic006G260600 Sobic002G120200--Sobic006G260600 Sobic001G451200 Sobic001G451200 Sobic002G120200--Sobic001G451200 Sobic002G200500 Sobic002G200500 Sobic002G120200--Sobic002G200500 Sobic002G120200--Sobic004G356600 Sobic009G233600 Sobic009G233600 Sobic002G120200--Sobic009G233600 Sobic006G073150 Sobic006G073150 Sobic002G120200--Sobic006G073150 Sobic006G271100 Sobic006G271100 Sobic002G120200--Sobic006G271100 Sobic001G256900--Sobic004G356600 Sobic007G210400 Sobic007G210400 Sobic001G256900--Sobic007G210400 Sobic003G423100 Sobic003G423100 Sobic001G256900--Sobic003G423100 Sobic001G256900--Sobic005G097700 Sobic003G343100 Sobic003G343100 Sobic001G256900--Sobic003G343100 Sobic006G090201 Sobic006G090201 Sobic001G256900--Sobic006G090201 Sobic001G378550 Sobic001G378550 Sobic001G256900--Sobic001G378550 Sobic010G231400 Sobic010G231400 Sobic001G256900--Sobic010G231400 Sobic001G049000 Sobic001G049000 Sobic001G256900--Sobic001G049000 Sobic001G362400--Sobic002G034400 Sobic001G362400--Sobic002G120200 Sobic007G043200 Sobic007G043200 Sobic001G362400--Sobic007G043200 Sobic001G362400--Sobic003G222400 Sobic001G419900 Sobic001G419900 Sobic001G362400--Sobic001G419900 Sobic001G134600 Sobic001G134600 Sobic001G362400--Sobic001G134600 Sobic001G362400--Sobic002G200500 Sobic001G362400--Sobic004G356600 Sobic001G362400--Sobic006G146900 Sobic003G022800--Sobic007G169000 Sobic010G045200 Sobic010G045200 Sobic003G022800--Sobic010G045200 Sobic003G022800--Sobic004G356600 Sobic007G085350 Sobic007G085350 Sobic003G022800--Sobic007G085350 Sobic003G022800--Sobic008G086401 Sobic009G167300 Sobic009G167300 Sobic003G022800--Sobic009G167300 Sobic003G201300 Sobic003G201300 Sobic003G022800--Sobic003G201300 Sobic009G116766 Sobic009G116766 Sobic003G022800--Sobic009G116766 Sobic005G087600 Sobic005G087600 Sobic003G022800--Sobic005G087600 Sobic004G074200 Sobic004G074200 Sobic010G153532--Sobic004G074200 Sobic009G114600 Sobic009G114600 Sobic010G153532--Sobic009G114600 Sobic002G175550 Sobic002G175550 Sobic010G153532--Sobic002G175550 Sobic006G004000 Sobic006G004000 Sobic010G153532--Sobic006G004000 Sobic010G153532--Sobic005G097700 Sobic010G153532--Sobic003G219400 Sobic010G153532--Sobic006G073150 Sobic010G153532--Sobic001G451200 Sobic003G221300 Sobic003G221300 Sobic010G153532--Sobic003G221300 Sobic003G219400--Sobic010G153532 Sobic003G219400--Sobic004G074200 Sobic004G078300 Sobic004G078300 Sobic003G219400--Sobic004G078300 Sobic003G219400--Sobic002G034400 Sobic003G219400--Sobic007G085350 Sobic003G219400--Sobic001G134600 Sobic007G017400 Sobic007G017400 Sobic003G219400--Sobic007G017400 Sobic003G264000 Sobic003G264000 Sobic003G219400--Sobic003G264000 Sobic003G219400--Sobic001G419900 Sobic001G531000 Sobic001G531000 Sobic005G112632--Sobic001G531000 Sobic005G114600 Sobic005G114600 Sobic005G112632--Sobic005G114600 Sobic003G328400 Sobic003G328400 Sobic005G112632--Sobic003G328400 Sobic005G112632--Sobic004G357900 Sobic007G163600 Sobic007G163600 Sobic005G112632--Sobic007G163600 Sobic003G010500 Sobic003G010500 Sobic005G112632--Sobic003G010500 Sobic004G296100 Sobic004G296100 Sobic005G112632--Sobic004G296100 Sobic005G112632--Sobic006G073150 Sobic005G112632--Sobic006G146900
Octagon: transcription factors


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