Gene annotation
Transcriptome id Sobic.003G041300.1
Synonym Sb03g003680
Functional annotation frigida, putative, expressed
UniProt A0A1B6Q184
Pfam PF07899
Panther DB PTHR31791 PTHR31791:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22440 : FRIGIDA-like protein
RAP-DB (Rice) LOC_Os01g08580.1 : frigida, putative, expressed
MaizeGDB (Corn) Zm00025a023157
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G016600 OsSigP3 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K09648: mitochondrial inner membrane protease subunit 2
2 Sobic.007G069700 gar2, putative, expressed K11294: NCL, nucleolin
3 Sobic.004G175700 tetratricopeptide repeat domain containing protein, expressed -
4 Sobic.007G163600 expressed protein -
5 Sobic.004G305700 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
6 Sobic.001G099800 nucleic acid binding protein, putative, expressed -
7 Sobic.006G254300 RCC2, putative, expressed -
8 Sobic.004G080400 hrpN-interacting protein from Malus, putative, expressed -
9 Sobic.007G162500 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
10 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
11 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
12 Sobic.004G254600 RNA methyltransferase domain-containing protein 2, putative, expressed K15445: TRMT10, TRM10, tRNA (guanine9-N1)-methyltransferase
13 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
14 Sobic.002G130900 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
15 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
16 Sobic.001G007300 NFD2, putative, expressed -
17 Sobic.002G388100 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
18 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
19 Sobic.001G136500 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
20 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind


Gene co-expression network
sample Sobic003G041300 Sobic003G041300 Sobic006G016600 Sobic006G016600 Sobic003G041300--Sobic006G016600 Sobic007G069700 Sobic007G069700 Sobic003G041300--Sobic007G069700 Sobic004G175700 Sobic004G175700 Sobic003G041300--Sobic004G175700 Sobic007G163600 Sobic007G163600 Sobic003G041300--Sobic007G163600 Sobic004G305700 Sobic004G305700 Sobic003G041300--Sobic004G305700 Sobic001G099800 Sobic001G099800 Sobic003G041300--Sobic001G099800 Sobic006G254300 Sobic006G254300 Sobic003G041300--Sobic006G254300 Sobic004G080400 Sobic004G080400 Sobic003G041300--Sobic004G080400 Sobic007G162500 Sobic007G162500 Sobic003G041300--Sobic007G162500 Sobic002G384200 Sobic002G384200 Sobic006G016600--Sobic002G384200 Sobic006G016600--Sobic003G041300 Sobic003G049800 Sobic003G049800 Sobic006G016600--Sobic003G049800 Sobic003G030000 Sobic003G030000 Sobic006G016600--Sobic003G030000 Sobic009G107200 Sobic009G107200 Sobic006G016600--Sobic009G107200 Sobic006G016600--Sobic004G175700 Sobic006G180600 Sobic006G180600 Sobic006G016600--Sobic006G180600 Sobic007G192100 Sobic007G192100 Sobic006G016600--Sobic007G192100 Sobic002G293200 Sobic002G293200 Sobic006G016600--Sobic002G293200 Sobic002G126800 Sobic002G126800 Sobic007G069700--Sobic002G126800 Sobic003G432300 Sobic003G432300 Sobic007G069700--Sobic003G432300 Sobic005G028100 Sobic005G028100 Sobic007G069700--Sobic005G028100 Sobic002G132600 Sobic002G132600 Sobic007G069700--Sobic002G132600 Sobic010G038800 Sobic010G038800 Sobic007G069700--Sobic010G038800 Sobic001G373000 Sobic001G373000 Sobic007G069700--Sobic001G373000 Sobic009G253400 Sobic009G253400 Sobic007G069700--Sobic009G253400 Sobic004G038100 Sobic004G038100 Sobic007G069700--Sobic004G038100 Sobic001G097400 Sobic001G097400 Sobic007G069700--Sobic001G097400 Sobic001G404100 Sobic001G404100 Sobic004G175700--Sobic001G404100 Sobic003G367900 Sobic003G367900 Sobic004G175700--Sobic003G367900 Sobic008G137600 Sobic008G137600 Sobic004G175700--Sobic008G137600 Sobic002G279000 Sobic002G279000 Sobic004G175700--Sobic002G279000 Sobic007G152400 Sobic007G152400 Sobic004G175700--Sobic007G152400 Sobic001G532100 Sobic001G532100 Sobic004G175700--Sobic001G532100 Sobic006G079900 Sobic006G079900 Sobic004G175700--Sobic006G079900 Sobic001G402300 Sobic001G402300 Sobic004G175700--Sobic001G402300 Sobic001G285300 Sobic001G285300 Sobic004G175700--Sobic001G285300 Sobic003G245900 Sobic003G245900 Sobic007G163600--Sobic003G245900 Sobic006G146800 Sobic006G146800 Sobic007G163600--Sobic006G146800 Sobic010G123300 Sobic010G123300 Sobic007G163600--Sobic010G123300 Sobic001G131700 Sobic001G131700 Sobic007G163600--Sobic001G131700 Sobic003G052600 Sobic003G052600 Sobic007G163600--Sobic003G052600 Sobic001G471600 Sobic001G471600 Sobic007G163600--Sobic001G471600 Sobic003G273300 Sobic003G273300 Sobic007G163600--Sobic003G273300 Sobic008G125100 Sobic008G125100 Sobic007G163600--Sobic008G125100 Sobic003G332200 Sobic003G332200 Sobic007G163600--Sobic003G332200 Sobic001G008500 Sobic001G008500 Sobic004G305700--Sobic001G008500 Sobic007G114000 Sobic007G114000 Sobic004G305700--Sobic007G114000 Sobic009G071700 Sobic009G071700 Sobic004G305700--Sobic009G071700 Sobic001G371100 Sobic001G371100 Sobic004G305700--Sobic001G371100 Sobic004G047200 Sobic004G047200 Sobic004G305700--Sobic004G047200 Sobic006G251600 Sobic006G251600 Sobic004G305700--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic004G305700--Sobic003G008600 Sobic004G082700 Sobic004G082700 Sobic004G305700--Sobic004G082700 Sobic003G211100 Sobic003G211100 Sobic004G305700--Sobic003G211100 Sobic003G058900 Sobic003G058900 Sobic001G099800--Sobic003G058900 Sobic001G136500 Sobic001G136500 Sobic001G099800--Sobic001G136500 Sobic001G132900 Sobic001G132900 Sobic001G099800--Sobic001G132900 Sobic001G280400 Sobic001G280400 Sobic001G099800--Sobic001G280400 Sobic004G206300 Sobic004G206300 Sobic001G099800--Sobic004G206300 Sobic008G008300 Sobic008G008300 Sobic001G099800--Sobic008G008300 Sobic008G125000 Sobic008G125000 Sobic001G099800--Sobic008G125000 Sobic004G117800 Sobic004G117800 Sobic001G099800--Sobic004G117800 Sobic008G051100 Sobic008G051100 Sobic001G099800--Sobic008G051100 Sobic001G493400 Sobic001G493400 Sobic006G254300--Sobic001G493400 Sobic002G313600 Sobic002G313600 Sobic006G254300--Sobic002G313600 Sobic001G131600 Sobic001G131600 Sobic006G254300--Sobic001G131600 Sobic001G382700 Sobic001G382700 Sobic006G254300--Sobic001G382700 Sobic010G134100 Sobic010G134100 Sobic006G254300--Sobic010G134100 Sobic009G214100 Sobic009G214100 Sobic006G254300--Sobic009G214100 Sobic010G277300 Sobic010G277300 Sobic006G254300--Sobic010G277300 Sobic008G113800 Sobic008G113800 Sobic006G254300--Sobic008G113800 Sobic010G178600 Sobic010G178600 Sobic006G254300--Sobic010G178600 Sobic003G022800 Sobic003G022800 Sobic004G080400--Sobic003G022800 Sobic004G080400--Sobic003G041300 Sobic007G169000 Sobic007G169000 Sobic004G080400--Sobic007G169000 Sobic004G080400--Sobic002G293200 Sobic004G080400--Sobic006G016600 Sobic008G086401 Sobic008G086401 Sobic004G080400--Sobic008G086401 Sobic005G121100 Sobic005G121100 Sobic004G080400--Sobic005G121100 Sobic002G005700 Sobic002G005700 Sobic004G080400--Sobic002G005700 Sobic002G126200 Sobic002G126200 Sobic004G080400--Sobic002G126200 Sobic007G162500--Sobic003G030000 Sobic002G230400 Sobic002G230400 Sobic007G162500--Sobic002G230400 Sobic009G229900 Sobic009G229900 Sobic007G162500--Sobic009G229900 Sobic004G020100 Sobic004G020100 Sobic007G162500--Sobic004G020100 Sobic003G062101 Sobic003G062101 Sobic007G162500--Sobic003G062101 Sobic001G135300 Sobic001G135300 Sobic007G162500--Sobic001G135300 Sobic008G174500 Sobic008G174500 Sobic007G162500--Sobic008G174500 Sobic010G273800 Sobic010G273800 Sobic007G162500--Sobic010G273800 Sobic002G250550 Sobic002G250550 Sobic007G162500--Sobic002G250550
Octagon: transcription factors


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