Gene annotation
Transcriptome id Sobic.006G016600.1
Synonym Sb06g001580
Functional annotation OsSigP3 - Putative Type I Signal Peptidase homologue
employs a putative Ser/Lys catalytic dyad, expressed
UniProt C5YC77
Pfam PF00717
Panther DB PTHR12383 PTHR12383:SF22
NCBI CDD KOG1568; Mitochondrial inner membrane protease, subunit IMP2
KEGG Orthology K09648; mitochondrial inner membrane protease subunit 2
Gene Ontology GO:0016020; membrane GO:0008236serine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT3G08980 : Peptidase S24/S26A/S26B/S26C family protein
RAP-DB (Rice) LOC_Os04g08340.1 : OsSigP3 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed
MaizeGDB (Corn) Zm00025a055427 , Zm00025a012344
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G384200 expressed protein -
2 Sobic.003G041300 frigida, putative, expressed -
3 Sobic.003G049800 protein of unknown function domain containing protein, expressed -
4 Sobic.003G030000 expressed protein -
5 Sobic.009G107200 expressed protein -
6 Sobic.004G175700 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.006G180600 expressed protein -
8 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
9 Sobic.002G293200 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
10 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
11 Sobic.009G016500 expressed protein -
12 Sobic.004G229000 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
13 Sobic.003G435000 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
14 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
15 Sobic.002G126200 expressed protein -
16 Sobic.002G005700 - -
17 Sobic.001G402600 expressed protein -
18 Sobic.001G448200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
19 Sobic.005G121100 ZOS11-03 - C2H2 zinc finger protein, expressed -
20 Sobic.007G211500 expressed protein -


Gene co-expression network
sample Sobic006G016600 Sobic006G016600 Sobic002G384200 Sobic002G384200 Sobic006G016600--Sobic002G384200 Sobic003G041300 Sobic003G041300 Sobic006G016600--Sobic003G041300 Sobic003G049800 Sobic003G049800 Sobic006G016600--Sobic003G049800 Sobic003G030000 Sobic003G030000 Sobic006G016600--Sobic003G030000 Sobic009G107200 Sobic009G107200 Sobic006G016600--Sobic009G107200 Sobic004G175700 Sobic004G175700 Sobic006G016600--Sobic004G175700 Sobic006G180600 Sobic006G180600 Sobic006G016600--Sobic006G180600 Sobic007G192100 Sobic007G192100 Sobic006G016600--Sobic007G192100 Sobic002G293200 Sobic002G293200 Sobic006G016600--Sobic002G293200 Sobic005G121100 Sobic005G121100 Sobic002G384200--Sobic005G121100 Sobic002G384200--Sobic006G016600 Sobic002G384200--Sobic006G180600 Sobic001G324900 Sobic001G324900 Sobic002G384200--Sobic001G324900 Sobic009G206700 Sobic009G206700 Sobic002G384200--Sobic009G206700 Sobic001G047100 Sobic001G047100 Sobic002G384200--Sobic001G047100 Sobic010G076400 Sobic010G076400 Sobic002G384200--Sobic010G076400 Sobic003G358300 Sobic003G358300 Sobic002G384200--Sobic003G358300 Sobic010G054200 Sobic010G054200 Sobic002G384200--Sobic010G054200 Sobic003G041300--Sobic006G016600 Sobic007G069700 Sobic007G069700 Sobic003G041300--Sobic007G069700 Sobic003G041300--Sobic004G175700 Sobic007G163600 Sobic007G163600 Sobic003G041300--Sobic007G163600 Sobic004G305700 Sobic004G305700 Sobic003G041300--Sobic004G305700 Sobic001G099800 Sobic001G099800 Sobic003G041300--Sobic001G099800 Sobic006G254300 Sobic006G254300 Sobic003G041300--Sobic006G254300 Sobic004G080400 Sobic004G080400 Sobic003G041300--Sobic004G080400 Sobic007G162500 Sobic007G162500 Sobic003G041300--Sobic007G162500 Sobic010G231700 Sobic010G231700 Sobic003G049800--Sobic010G231700 Sobic002G352200 Sobic002G352200 Sobic003G049800--Sobic002G352200 Sobic002G124900 Sobic002G124900 Sobic003G049800--Sobic002G124900 Sobic003G074900 Sobic003G074900 Sobic003G049800--Sobic003G074900 Sobic003G016300 Sobic003G016300 Sobic003G049800--Sobic003G016300 Sobic007G159700 Sobic007G159700 Sobic003G049800--Sobic007G159700 Sobic006G271000 Sobic006G271000 Sobic003G049800--Sobic006G271000 Sobic003G049800--Sobic009G206700 Sobic006G124300 Sobic006G124300 Sobic003G049800--Sobic006G124300 Sobic003G030000--Sobic007G162500 Sobic003G030000--Sobic006G016600 Sobic009G171200 Sobic009G171200 Sobic003G030000--Sobic009G171200 Sobic010G018800 Sobic010G018800 Sobic003G030000--Sobic010G018800 Sobic003G432800 Sobic003G432800 Sobic003G030000--Sobic003G432800 Sobic010G256433 Sobic010G256433 Sobic003G030000--Sobic010G256433 Sobic001G135300 Sobic001G135300 Sobic003G030000--Sobic001G135300 Sobic006G112500 Sobic006G112500 Sobic003G030000--Sobic006G112500 Sobic001G003700 Sobic001G003700 Sobic003G030000--Sobic001G003700 Sobic006G153200 Sobic006G153200 Sobic009G107200--Sobic006G153200 Sobic004G017900 Sobic004G017900 Sobic009G107200--Sobic004G017900 Sobic007G014700 Sobic007G014700 Sobic009G107200--Sobic007G014700 Sobic003G167000 Sobic003G167000 Sobic009G107200--Sobic003G167000 Sobic001G188000 Sobic001G188000 Sobic009G107200--Sobic001G188000 Sobic004G100100 Sobic004G100100 Sobic009G107200--Sobic004G100100 Sobic001G219800 Sobic001G219800 Sobic009G107200--Sobic001G219800 Sobic009G218000 Sobic009G218000 Sobic009G107200--Sobic009G218000 Sobic008G011800 Sobic008G011800 Sobic009G107200--Sobic008G011800 Sobic001G404100 Sobic001G404100 Sobic004G175700--Sobic001G404100 Sobic003G367900 Sobic003G367900 Sobic004G175700--Sobic003G367900 Sobic008G137600 Sobic008G137600 Sobic004G175700--Sobic008G137600 Sobic002G279000 Sobic002G279000 Sobic004G175700--Sobic002G279000 Sobic007G152400 Sobic007G152400 Sobic004G175700--Sobic007G152400 Sobic001G532100 Sobic001G532100 Sobic004G175700--Sobic001G532100 Sobic006G079900 Sobic006G079900 Sobic004G175700--Sobic006G079900 Sobic001G402300 Sobic001G402300 Sobic004G175700--Sobic001G402300 Sobic001G285300 Sobic001G285300 Sobic004G175700--Sobic001G285300 Sobic002G246200 Sobic002G246200 Sobic006G180600--Sobic002G246200 Sobic001G100400 Sobic001G100400 Sobic006G180600--Sobic001G100400 Sobic010G015200 Sobic010G015200 Sobic006G180600--Sobic010G015200 Sobic007G211500 Sobic007G211500 Sobic006G180600--Sobic007G211500 Sobic006G180600--Sobic002G384200 Sobic010G199100 Sobic010G199100 Sobic006G180600--Sobic010G199100 Sobic001G533300 Sobic001G533300 Sobic006G180600--Sobic001G533300 Sobic007G091000 Sobic007G091000 Sobic006G180600--Sobic007G091000 Sobic001G441000 Sobic001G441000 Sobic006G180600--Sobic001G441000 Sobic008G108500 Sobic008G108500 Sobic007G192100--Sobic008G108500 Sobic001G036700 Sobic001G036700 Sobic007G192100--Sobic001G036700 Sobic001G402600 Sobic001G402600 Sobic007G192100--Sobic001G402600 Sobic002G176400 Sobic002G176400 Sobic007G192100--Sobic002G176400 Sobic001G126200 Sobic001G126200 Sobic007G192100--Sobic001G126200 Sobic007G038800 Sobic007G038800 Sobic007G192100--Sobic007G038800 Sobic001G392800 Sobic001G392800 Sobic007G192100--Sobic001G392800 Sobic002G399500 Sobic002G399500 Sobic007G192100--Sobic002G399500 Sobic007G117800 Sobic007G117800 Sobic007G192100--Sobic007G117800 Sobic002G293200--Sobic005G121100 Sobic002G293200--Sobic006G016600 Sobic002G293200--Sobic003G049800 Sobic001G041000 Sobic001G041000 Sobic002G293200--Sobic001G041000 Sobic002G293200--Sobic002G384200 Sobic004G128000 Sobic004G128000 Sobic002G293200--Sobic004G128000 Sobic002G005700 Sobic002G005700 Sobic002G293200--Sobic002G005700 Sobic002G293200--Sobic004G080400 Sobic006G066600 Sobic006G066600 Sobic002G293200--Sobic006G066600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.