Gene annotation
Transcriptome id Sobic.003G049800.1
Synonym Sb03g004340
Functional annotation protein of unknown function domain containing protein, expressed
UniProt C5XNE3
Pfam PF01918
Panther DB PTHR31947 PTHR31947:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G34160 : Alba DNA/RNA-binding protein
RAP-DB (Rice) LOC_Os01g07810.1 : protein of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023241 , Zm00025a035728
Brachypodium KQK07273
Barley -
Wheat TraesCS3D02G130100 , TraesCS3A02G129200
Populus -


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cDNA sequences
Sobic.003G049800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G231700 expressed protein -
2 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
3 Sobic.002G124900 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
4 Sobic.003G074900 expressed protein -
5 Sobic.003G016300 SFT2, putative, expressed -
6 Sobic.007G159700 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
7 Sobic.006G271000 mis12 protein, expressed -
8 Sobic.009G206700 proteasome maturation factor UMP1 family protein, expressed K11599: POMP, proteasome maturation protein
9 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
10 Sobic.001G538500 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.009G211900 expressed protein -
12 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
13 Sobic.003G054100 expressed protein -
14 Sobic.002G387800 - K12456: anaphase-promoting complex subunit 13
15 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
16 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
17 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
18 Sobic.009G068000 late embryogenesis abundant protein, putative, expressed -
19 Sobic.002G308300 expressed protein -
20 Sobic.001G219800 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic003G049800 Sobic003G049800 Sobic010G231700 Sobic010G231700 Sobic003G049800--Sobic010G231700 Sobic002G352200 Sobic002G352200 Sobic003G049800--Sobic002G352200 Sobic002G124900 Sobic002G124900 Sobic003G049800--Sobic002G124900 Sobic003G074900 Sobic003G074900 Sobic003G049800--Sobic003G074900 Sobic003G016300 Sobic003G016300 Sobic003G049800--Sobic003G016300 Sobic007G159700 Sobic007G159700 Sobic003G049800--Sobic007G159700 Sobic006G271000 Sobic006G271000 Sobic003G049800--Sobic006G271000 Sobic009G206700 Sobic009G206700 Sobic003G049800--Sobic009G206700 Sobic006G124300 Sobic006G124300 Sobic003G049800--Sobic006G124300 Sobic010G231700--Sobic002G352200 Sobic010G231700--Sobic002G124900 Sobic009G215300 Sobic009G215300 Sobic010G231700--Sobic009G215300 Sobic010G231700--Sobic003G049800 Sobic002G246800 Sobic002G246800 Sobic010G231700--Sobic002G246800 Sobic003G335300 Sobic003G335300 Sobic010G231700--Sobic003G335300 Sobic002G186500 Sobic002G186500 Sobic010G231700--Sobic002G186500 Sobic007G013900 Sobic007G013900 Sobic010G231700--Sobic007G013900 Sobic010G231700--Sobic003G016300 Sobic002G420600 Sobic002G420600 Sobic002G352200--Sobic002G420600 Sobic002G352200--Sobic003G016300 Sobic008G018300 Sobic008G018300 Sobic002G352200--Sobic008G018300 Sobic002G255400 Sobic002G255400 Sobic002G352200--Sobic002G255400 Sobic004G173700 Sobic004G173700 Sobic002G352200--Sobic004G173700 Sobic003G260600 Sobic003G260600 Sobic002G352200--Sobic003G260600 Sobic009G224400 Sobic009G224400 Sobic002G352200--Sobic009G224400 Sobic002G352200--Sobic002G124900 Sobic001G073600 Sobic001G073600 Sobic002G352200--Sobic001G073600 Sobic002G124900--Sobic002G352200 Sobic004G261800 Sobic004G261800 Sobic002G124900--Sobic004G261800 Sobic002G124900--Sobic010G231700 Sobic002G124900--Sobic002G420600 Sobic003G013700 Sobic003G013700 Sobic002G124900--Sobic003G013700 Sobic001G303900 Sobic001G303900 Sobic002G124900--Sobic001G303900 Sobic002G124900--Sobic004G173700 Sobic007G014700 Sobic007G014700 Sobic002G124900--Sobic007G014700 Sobic004G247500 Sobic004G247500 Sobic002G124900--Sobic004G247500 Sobic008G136800 Sobic008G136800 Sobic003G074900--Sobic008G136800 Sobic003G074900--Sobic006G124300 Sobic006G203900 Sobic006G203900 Sobic003G074900--Sobic006G203900 Sobic002G387800 Sobic002G387800 Sobic003G074900--Sobic002G387800 Sobic009G211900 Sobic009G211900 Sobic003G074900--Sobic009G211900 Sobic003G074900--Sobic003G016300 Sobic001G219800 Sobic001G219800 Sobic003G074900--Sobic001G219800 Sobic007G141100 Sobic007G141100 Sobic003G074900--Sobic007G141100 Sobic009G001900 Sobic009G001900 Sobic003G074900--Sobic009G001900 Sobic003G016300--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic003G016300--Sobic002G217500 Sobic001G192700 Sobic001G192700 Sobic003G016300--Sobic001G192700 Sobic003G016300--Sobic001G219800 Sobic003G016300--Sobic008G018300 Sobic003G016300--Sobic006G203900 Sobic003G016300--Sobic002G255400 Sobic003G016300--Sobic009G211900 Sobic003G016300--Sobic002G420600 Sobic007G159700--Sobic001G073600 Sobic001G282500 Sobic001G282500 Sobic007G159700--Sobic001G282500 Sobic004G155100 Sobic004G155100 Sobic007G159700--Sobic004G155100 Sobic002G395000 Sobic002G395000 Sobic007G159700--Sobic002G395000 Sobic003G135600 Sobic003G135600 Sobic007G159700--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic007G159700--Sobic009G191400 Sobic002G309500 Sobic002G309500 Sobic007G159700--Sobic002G309500 Sobic001G458800 Sobic001G458800 Sobic007G159700--Sobic001G458800 Sobic007G159700--Sobic009G224400 Sobic001G352800 Sobic001G352800 Sobic006G271000--Sobic001G352800 Sobic002G153400 Sobic002G153400 Sobic006G271000--Sobic002G153400 Sobic009G220000 Sobic009G220000 Sobic006G271000--Sobic009G220000 Sobic001G135200 Sobic001G135200 Sobic006G271000--Sobic001G135200 Sobic006G271000--Sobic001G192700 Sobic001G286100 Sobic001G286100 Sobic006G271000--Sobic001G286100 Sobic010G002800 Sobic010G002800 Sobic006G271000--Sobic010G002800 Sobic001G348000 Sobic001G348000 Sobic006G271000--Sobic001G348000 Sobic005G210500 Sobic005G210500 Sobic006G271000--Sobic005G210500 Sobic006G057200 Sobic006G057200 Sobic009G206700--Sobic006G057200 Sobic010G264300 Sobic010G264300 Sobic009G206700--Sobic010G264300 Sobic001G286200 Sobic001G286200 Sobic009G206700--Sobic001G286200 Sobic002G246200 Sobic002G246200 Sobic009G206700--Sobic002G246200 Sobic004G244800 Sobic004G244800 Sobic009G206700--Sobic004G244800 Sobic009G212200 Sobic009G212200 Sobic009G206700--Sobic009G212200 Sobic001G519000 Sobic001G519000 Sobic009G206700--Sobic001G519000 Sobic001G175300 Sobic001G175300 Sobic009G206700--Sobic001G175300 Sobic002G356400 Sobic002G356400 Sobic009G206700--Sobic002G356400 Sobic006G124300--Sobic009G211900 Sobic006G124300--Sobic006G203900 Sobic006G124300--Sobic008G136800 Sobic004G260200 Sobic004G260200 Sobic006G124300--Sobic004G260200 Sobic005G091700 Sobic005G091700 Sobic006G124300--Sobic005G091700 Sobic001G030300 Sobic001G030300 Sobic006G124300--Sobic001G030300 Sobic006G124300--Sobic003G135600 Sobic006G124300--Sobic003G074900 Sobic001G350600 Sobic001G350600 Sobic006G124300--Sobic001G350600
Octagon: transcription factors


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