Gene annotation
Transcriptome id Sobic.007G159700.1
Synonym ATPQ, Sb07g023320
Functional annotation expressed protein
UniProt C5YMN5
Pfam PF05873
Panther DB PTHR12700 PTHR12700:SF12
NCBI CDD KOG3366; Mitochondrial F1F0-ATP synthase, subunit d/ATP7
KEGG Orthology K02138; ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
Gene Ontology GO:0015986; ATP synthesis coupled proton transport GO:0015078proton transmembrane transporter activity GO:0000276mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)


Orthologs (automatic annotation)
TAIR AT3G52300 : ATP synthase D chain, mitochondrial
RAP-DB (Rice) LOC_Os08g37320.1 : expressed protein
MaizeGDB (Corn) Zm00025a005462
Brachypodium KQJ98678 , KQK16442
Barley HORVU2Hr1G072650.1 , HORVU2Hr1G072660.1 , HORVU2Hr1G072660.2
Wheat TraesCS2B02G310000 , TraesCS2D02G291300 , TraesCS2A02G293700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G159700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
2 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
3 Sobic.004G155100 uncharacterized protein MJ0304, putative, expressed -
4 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
5 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
6 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
7 Sobic.002G309500 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
8 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
9 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
10 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
11 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
12 Sobic.003G124300 peroxiredoxin, putative, expressed -
13 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
14 Sobic.008G150300 Lg106, putative, expressed -
15 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
16 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
17 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
18 Sobic.009G215300 fiber protein Fb11, putative, expressed -
19 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
20 Sobic.009G240700 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase


Gene co-expression network
sample Sobic007G159700 Sobic007G159700 Sobic001G073600 Sobic001G073600 Sobic007G159700--Sobic001G073600 Sobic001G282500 Sobic001G282500 Sobic007G159700--Sobic001G282500 Sobic004G155100 Sobic004G155100 Sobic007G159700--Sobic004G155100 Sobic002G395000 Sobic002G395000 Sobic007G159700--Sobic002G395000 Sobic003G135600 Sobic003G135600 Sobic007G159700--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic007G159700--Sobic009G191400 Sobic002G309500 Sobic002G309500 Sobic007G159700--Sobic002G309500 Sobic001G458800 Sobic001G458800 Sobic007G159700--Sobic001G458800 Sobic009G224400 Sobic009G224400 Sobic007G159700--Sobic009G224400 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic004G344800 Sobic004G344800 Sobic001G073600--Sobic004G344800 Sobic007G119600 Sobic007G119600 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100 Sobic002G309700 Sobic002G309700 Sobic001G282500--Sobic002G309700 Sobic009G215300 Sobic009G215300 Sobic001G282500--Sobic009G215300 Sobic004G260200 Sobic004G260200 Sobic001G282500--Sobic004G260200 Sobic002G356400 Sobic002G356400 Sobic001G282500--Sobic002G356400 Sobic001G282500--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G282500--Sobic002G308300 Sobic001G181500 Sobic001G181500 Sobic001G282500--Sobic001G181500 Sobic001G282500--Sobic003G135600 Sobic001G350600 Sobic001G350600 Sobic001G282500--Sobic001G350600 Sobic004G155100--Sobic003G135600 Sobic004G155100--Sobic002G309700 Sobic004G155100--Sobic002G395000 Sobic004G155100--Sobic009G224400 Sobic004G155100--Sobic004G260200 Sobic004G155100--Sobic001G073600 Sobic009G240700 Sobic009G240700 Sobic004G155100--Sobic009G240700 Sobic001G206700 Sobic001G206700 Sobic004G155100--Sobic001G206700 Sobic002G180300 Sobic002G180300 Sobic004G155100--Sobic002G180300 Sobic002G395000--Sobic004G260200 Sobic002G395000--Sobic003G135600 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic002G395000--Sobic004G155100 Sobic007G023400 Sobic007G023400 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic003G135600--Sobic004G155100 Sobic003G135600--Sobic002G395000 Sobic003G135600--Sobic001G073600 Sobic003G135600--Sobic009G224400 Sobic003G135600--Sobic002G309700 Sobic003G135600--Sobic009G191400 Sobic003G135600--Sobic001G181500 Sobic009G211900 Sobic009G211900 Sobic003G135600--Sobic009G211900 Sobic003G135600--Sobic004G260200 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic009G191400--Sobic002G262200 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic006G058900 Sobic006G058900 Sobic002G309500--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic002G309500--Sobic004G202100 Sobic001G050700 Sobic001G050700 Sobic002G309500--Sobic001G050700 Sobic002G309500--Sobic007G159700 Sobic002G309500--Sobic002G395000 Sobic001G031900 Sobic001G031900 Sobic002G309500--Sobic001G031900 Sobic004G262300 Sobic004G262300 Sobic002G309500--Sobic004G262300 Sobic003G322300 Sobic003G322300 Sobic002G309500--Sobic003G322300 Sobic004G297700 Sobic004G297700 Sobic002G309500--Sobic004G297700 Sobic003G034900 Sobic003G034900 Sobic001G458800--Sobic003G034900 Sobic001G458800--Sobic009G224400 Sobic001G458800--Sobic006G058900 Sobic001G115700 Sobic001G115700 Sobic001G458800--Sobic001G115700 Sobic007G171500 Sobic007G171500 Sobic001G458800--Sobic007G171500 Sobic001G458800--Sobic001G073600 Sobic002G186300 Sobic002G186300 Sobic001G458800--Sobic002G186300 Sobic001G458800--Sobic002G395000 Sobic001G458800--Sobic001G031900 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic009G224400--Sobic002G395000 Sobic009G224400--Sobic007G119600 Sobic009G224400--Sobic003G135600 Sobic009G224400--Sobic001G458800 Sobic009G224400--Sobic004G155100 Sobic009G224400--Sobic003G034900 Sobic009G224400--Sobic002G262200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.