Gene annotation
Transcriptome id Sobic.001G538500.1,Sobic.001G538500.2
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1Z5SBX2 , A0A1B6QR42
Pfam PF13639 PF08784
Panther DB PTHR16047
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G03450 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os10g39850.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G538500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
2 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
3 Sobic.003G016300 SFT2, putative, expressed -
4 Sobic.009G206600 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
5 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
6 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
7 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
8 Sobic.010G231700 expressed protein -
9 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
10 Sobic.009G211900 expressed protein -
11 Sobic.004G054700 expressed protein K10745: ribonuclease H2 subunit C
12 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
13 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
14 Sobic.001G181500 expressed protein -
15 Sobic.001G050400 expressed protein -
16 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
17 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
18 Sobic.003G028200 expressed protein -
19 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
20 Sobic.002G186500 UPF0041 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G538500 Sobic001G538500 Sobic002G217500 Sobic002G217500 Sobic001G538500--Sobic002G217500 Sobic004G039400 Sobic004G039400 Sobic001G538500--Sobic004G039400 Sobic003G016300 Sobic003G016300 Sobic001G538500--Sobic003G016300 Sobic009G206600 Sobic009G206600 Sobic001G538500--Sobic009G206600 Sobic001G008100 Sobic001G008100 Sobic001G538500--Sobic001G008100 Sobic010G040900 Sobic010G040900 Sobic001G538500--Sobic010G040900 Sobic006G203900 Sobic006G203900 Sobic001G538500--Sobic006G203900 Sobic010G231700 Sobic010G231700 Sobic001G538500--Sobic010G231700 Sobic003G388700 Sobic003G388700 Sobic001G538500--Sobic003G388700 Sobic002G217500--Sobic003G016300 Sobic002G352200 Sobic002G352200 Sobic002G217500--Sobic002G352200 Sobic002G255400 Sobic002G255400 Sobic002G217500--Sobic002G255400 Sobic006G153200 Sobic006G153200 Sobic002G217500--Sobic006G153200 Sobic001G219800 Sobic001G219800 Sobic002G217500--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic002G217500--Sobic008G018300 Sobic003G260600 Sobic003G260600 Sobic002G217500--Sobic003G260600 Sobic007G023400 Sobic007G023400 Sobic002G217500--Sobic007G023400 Sobic009G218000 Sobic009G218000 Sobic002G217500--Sobic009G218000 Sobic004G039400--Sobic001G008100 Sobic001G073600 Sobic001G073600 Sobic004G039400--Sobic001G073600 Sobic004G039400--Sobic010G040900 Sobic001G443200 Sobic001G443200 Sobic004G039400--Sobic001G443200 Sobic002G262200 Sobic002G262200 Sobic004G039400--Sobic002G262200 Sobic009G191400 Sobic009G191400 Sobic004G039400--Sobic009G191400 Sobic004G344800 Sobic004G344800 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic002G079700 Sobic002G079700 Sobic004G039400--Sobic002G079700 Sobic003G016300--Sobic002G352200 Sobic003G016300--Sobic002G217500 Sobic001G192700 Sobic001G192700 Sobic003G016300--Sobic001G192700 Sobic003G016300--Sobic001G219800 Sobic003G016300--Sobic008G018300 Sobic003G016300--Sobic006G203900 Sobic003G016300--Sobic002G255400 Sobic009G211900 Sobic009G211900 Sobic003G016300--Sobic009G211900 Sobic002G420600 Sobic002G420600 Sobic003G016300--Sobic002G420600 Sobic009G206600--Sobic004G039400 Sobic002G387800 Sobic002G387800 Sobic009G206600--Sobic002G387800 Sobic009G206600--Sobic001G073600 Sobic009G206600--Sobic006G203900 Sobic009G206600--Sobic003G388700 Sobic004G186100 Sobic004G186100 Sobic009G206600--Sobic004G186100 Sobic007G003100 Sobic007G003100 Sobic009G206600--Sobic007G003100 Sobic009G206600--Sobic008G018300 Sobic009G206600--Sobic002G217500 Sobic001G008100--Sobic004G039400 Sobic006G041800 Sobic006G041800 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic001G008100--Sobic010G040900 Sobic001G387800 Sobic001G387800 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic002G276800 Sobic002G276800 Sobic001G008100--Sobic002G276800 Sobic010G040900--Sobic004G039400 Sobic010G040900--Sobic001G443200 Sobic010G040900--Sobic009G191400 Sobic010G040900--Sobic001G008100 Sobic001G178500 Sobic001G178500 Sobic010G040900--Sobic001G178500 Sobic006G126000 Sobic006G126000 Sobic010G040900--Sobic006G126000 Sobic003G261800 Sobic003G261800 Sobic010G040900--Sobic003G261800 Sobic003G135600 Sobic003G135600 Sobic010G040900--Sobic003G135600 Sobic010G040900--Sobic004G344800 Sobic008G136800 Sobic008G136800 Sobic006G203900--Sobic008G136800 Sobic006G203900--Sobic009G211900 Sobic001G035400 Sobic001G035400 Sobic006G203900--Sobic001G035400 Sobic006G203900--Sobic001G073600 Sobic004G138300 Sobic004G138300 Sobic006G203900--Sobic004G138300 Sobic006G124300 Sobic006G124300 Sobic006G203900--Sobic006G124300 Sobic006G203900--Sobic003G135600 Sobic009G001900 Sobic009G001900 Sobic006G203900--Sobic009G001900 Sobic007G013900 Sobic007G013900 Sobic006G203900--Sobic007G013900 Sobic010G231700--Sobic002G352200 Sobic002G124900 Sobic002G124900 Sobic010G231700--Sobic002G124900 Sobic009G215300 Sobic009G215300 Sobic010G231700--Sobic009G215300 Sobic003G049800 Sobic003G049800 Sobic010G231700--Sobic003G049800 Sobic002G246800 Sobic002G246800 Sobic010G231700--Sobic002G246800 Sobic003G335300 Sobic003G335300 Sobic010G231700--Sobic003G335300 Sobic002G186500 Sobic002G186500 Sobic010G231700--Sobic002G186500 Sobic010G231700--Sobic007G013900 Sobic010G231700--Sobic003G016300 Sobic007G119600 Sobic007G119600 Sobic003G388700--Sobic007G119600 Sobic003G388700--Sobic001G073600 Sobic003G388700--Sobic003G135600 Sobic003G388700--Sobic009G191400 Sobic003G388700--Sobic002G079700 Sobic001G473400 Sobic001G473400 Sobic003G388700--Sobic001G473400 Sobic010G002800 Sobic010G002800 Sobic003G388700--Sobic010G002800 Sobic010G258000 Sobic010G258000 Sobic003G388700--Sobic010G258000 Sobic003G388700--Sobic006G041800
Octagon: transcription factors


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