Gene annotation
Transcriptome id Sobic.004G229000.1
Synonym Sb04g027340
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A194YR92
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF436
NCBI CDD KOG4209; Splicing factor RNPS1, SR protein superfamily
KEGG Orthology K14396; PABPN1, polyadenylate-binding protein 2
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G10350 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g52140.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022165 , Zm00025a033143
Brachypodium KQK01815
Barley HORVU6Hr1G077700.9 , HORVU6Hr1G077700.8 , HORVU6Hr1G077700.1 , HORVU6Hr1G077700.3 , HORVU6Hr1G077700.2 , HORVU6Hr1G077700.5 , HORVU6Hr1G077700.4 , HORVU6Hr1G077700.7 , HORVU6Hr1G077700.6 , HORVU6Hr1G077700.11 , HORVU6Hr1G077700.10 , HORVU6Hr1G077700.13 , HORVU6Hr1G077700.12
Wheat TraesCS6D02G295600 , TraesCS7D02G179700 , TraesCS7D02G179700 , TraesCS7B02G083600 , TraesCS7A02G177900 , TraesCS7A02G177900 , TraesCS6A02G316300 , TraesCS6A02G316300 , TraesCS6B02G346800 , TraesCS6B02G346800 , TraesCS6B02G346800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G229000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G010200 - -
2 Sobic.007G036800 xylosyltransferase, putative, expressed -
3 Sobic.003G304800 OsRhmbd4 - Putative Rhomboid homologue, expressed -
4 Sobic.001G432100 expressed protein -
5 Sobic.003G109200 expressed protein -
6 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
7 Sobic.007G031100 RNA polymerase II complex component SRB7, putative, expressed K15152: MED21, mediator of RNA polymerase II transcription subunit 21
8 Sobic.004G129500 expressed protein -
9 Sobic.001G188700 OST3/OST6 family protein, putative, expressed K12669: OST3, oligosaccharyltransferase complex subunit gamma
10 Sobic.006G162600 expressed protein -
11 Sobic.009G060400 proline-rich family protein, putative, expressed -
12 Sobic.009G232500 expressed protein -
13 Sobic.010G103500 ATMAP70 protein, putative, expressed -
14 Sobic.004G184000 SFT2, putative, expressed -
15 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
16 Sobic.004G145600 expressed protein -
17 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
18 Sobic.003G410200 ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed K04649: HIP2, ubiquitin-conjugating enzyme (huntingtin interacting protein 2)
19 Sobic.009G056300 PHD finger protein, putative, expressed -
20 Sobic.009G194300 BSD, putative, expressed -


Gene co-expression network
sample Sobic004G229000 Sobic004G229000 Sobic007G010200 Sobic007G010200 Sobic004G229000--Sobic007G010200 Sobic007G036800 Sobic007G036800 Sobic004G229000--Sobic007G036800 Sobic003G304800 Sobic003G304800 Sobic004G229000--Sobic003G304800 Sobic001G432100 Sobic001G432100 Sobic004G229000--Sobic001G432100 Sobic003G109200 Sobic003G109200 Sobic004G229000--Sobic003G109200 Sobic008G125000 Sobic008G125000 Sobic004G229000--Sobic008G125000 Sobic007G031100 Sobic007G031100 Sobic004G229000--Sobic007G031100 Sobic004G129500 Sobic004G129500 Sobic004G229000--Sobic004G129500 Sobic001G188700 Sobic001G188700 Sobic004G229000--Sobic001G188700 Sobic007G010200--Sobic004G229000 Sobic008G112100 Sobic008G112100 Sobic007G010200--Sobic008G112100 Sobic007G010200--Sobic007G031100 Sobic007G010200--Sobic007G036800 Sobic007G140100 Sobic007G140100 Sobic007G010200--Sobic007G140100 Sobic009G054400 Sobic009G054400 Sobic007G010200--Sobic009G054400 Sobic007G010200--Sobic003G304800 Sobic001G309200 Sobic001G309200 Sobic007G010200--Sobic001G309200 Sobic010G018900 Sobic010G018900 Sobic007G010200--Sobic010G018900 Sobic007G036800--Sobic004G129500 Sobic010G103500 Sobic010G103500 Sobic007G036800--Sobic010G103500 Sobic004G145600 Sobic004G145600 Sobic007G036800--Sobic004G145600 Sobic007G036800--Sobic008G112100 Sobic010G059700 Sobic010G059700 Sobic007G036800--Sobic010G059700 Sobic007G036800--Sobic007G010200 Sobic004G350200 Sobic004G350200 Sobic007G036800--Sobic004G350200 Sobic002G123600 Sobic002G123600 Sobic007G036800--Sobic002G123600 Sobic004G256300 Sobic004G256300 Sobic007G036800--Sobic004G256300 Sobic009G122900 Sobic009G122900 Sobic003G304800--Sobic009G122900 Sobic003G304800--Sobic007G010200 Sobic001G472100 Sobic001G472100 Sobic003G304800--Sobic001G472100 Sobic003G304800--Sobic008G112100 Sobic003G331000 Sobic003G331000 Sobic003G304800--Sobic003G331000 Sobic003G304800--Sobic007G036800 Sobic009G060400 Sobic009G060400 Sobic003G304800--Sobic009G060400 Sobic005G160200 Sobic005G160200 Sobic003G304800--Sobic005G160200 Sobic001G425200 Sobic001G425200 Sobic003G304800--Sobic001G425200 Sobic009G218000 Sobic009G218000 Sobic001G432100--Sobic009G218000 Sobic001G432100--Sobic007G010200 Sobic001G432100--Sobic007G031100 Sobic001G432100--Sobic007G036800 Sobic001G432100--Sobic004G145600 Sobic002G280900 Sobic002G280900 Sobic001G432100--Sobic002G280900 Sobic001G432100--Sobic010G018900 Sobic001G432100--Sobic004G229000 Sobic004G354100 Sobic004G354100 Sobic001G432100--Sobic004G354100 Sobic001G107300 Sobic001G107300 Sobic003G109200--Sobic001G107300 Sobic004G208100 Sobic004G208100 Sobic003G109200--Sobic004G208100 Sobic002G387800 Sobic002G387800 Sobic003G109200--Sobic002G387800 Sobic001G521100 Sobic001G521100 Sobic003G109200--Sobic001G521100 Sobic009G169200 Sobic009G169200 Sobic003G109200--Sobic009G169200 Sobic009G232500 Sobic009G232500 Sobic003G109200--Sobic009G232500 Sobic006G095300 Sobic006G095300 Sobic003G109200--Sobic006G095300 Sobic003G109200--Sobic001G432100 Sobic003G297200 Sobic003G297200 Sobic003G109200--Sobic003G297200 Sobic009G056300 Sobic009G056300 Sobic008G125000--Sobic009G056300 Sobic001G115500 Sobic001G115500 Sobic008G125000--Sobic001G115500 Sobic006G245700 Sobic006G245700 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic004G075200 Sobic004G075200 Sobic008G125000--Sobic004G075200 Sobic009G120500 Sobic009G120500 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic004G358900 Sobic004G358900 Sobic008G125000--Sobic004G358900 Sobic007G031100--Sobic007G010200 Sobic007G031100--Sobic001G432100 Sobic007G031100--Sobic002G280900 Sobic003G410200 Sobic003G410200 Sobic007G031100--Sobic003G410200 Sobic003G085500 Sobic003G085500 Sobic007G031100--Sobic003G085500 Sobic007G031100--Sobic001G188700 Sobic002G422400 Sobic002G422400 Sobic007G031100--Sobic002G422400 Sobic007G031100--Sobic006G245700 Sobic007G031100--Sobic009G232500 Sobic004G129500--Sobic007G036800 Sobic004G129500--Sobic010G103500 Sobic001G296800 Sobic001G296800 Sobic004G129500--Sobic001G296800 Sobic003G028400 Sobic003G028400 Sobic004G129500--Sobic003G028400 Sobic003G411700 Sobic003G411700 Sobic004G129500--Sobic003G411700 Sobic002G426100 Sobic002G426100 Sobic004G129500--Sobic002G426100 Sobic004G129500--Sobic002G123600 Sobic002G043000 Sobic002G043000 Sobic004G129500--Sobic002G043000 Sobic001G361200 Sobic001G361200 Sobic004G129500--Sobic001G361200 Sobic005G110526 Sobic005G110526 Sobic001G188700--Sobic005G110526 Sobic004G018200 Sobic004G018200 Sobic001G188700--Sobic004G018200 Sobic006G094500 Sobic006G094500 Sobic001G188700--Sobic006G094500 Sobic009G187600 Sobic009G187600 Sobic001G188700--Sobic009G187600 Sobic001G188700--Sobic007G031100 Sobic001G188700--Sobic008G125000 Sobic001G132900 Sobic001G132900 Sobic001G188700--Sobic001G132900 Sobic003G058900 Sobic003G058900 Sobic001G188700--Sobic003G058900 Sobic001G434400 Sobic001G434400 Sobic001G188700--Sobic001G434400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.