Gene annotation
Transcriptome id Sobic.003G304800.3,Sobic.003G304800.4,Sobic.003G304800.1,Sobic.003G304800.2
Synonym RBL12, Sb03g035340, ATRBL12
Functional annotation OsRhmbd4 - Putative Rhomboid homologue, expressed
UniProt A0A1W0VZN7 , C5XKV0 , A0A1W0VZQ3
Pfam PF01694
Panther DB PTHR22936 PTHR22936:SF17
NCBI CDD KOG2980; Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G18600 : RHOMBOID-like protein 12
RAP-DB (Rice) LOC_Os01g55740.1 : OsRhmbd4 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS3A02G303000 , TraesCS3A02G303000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G122900 alpha 1,3-xylosyltransferase, putative, expressed K11714: rhamnogalacturonan II specific xylosyltransferase
2 Sobic.007G010200 - -
3 Sobic.001G472100 frigida, putative, expressed -
4 Sobic.008G112100 Phospholipid synthesis protein 1 PLS1 (Zm)(PubMedID : 27208977)@acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
5 Sobic.003G331000 exostosin family domain containing protein, expressed -
6 Sobic.007G036800 xylosyltransferase, putative, expressed -
7 Sobic.009G060400 proline-rich family protein, putative, expressed -
8 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
9 Sobic.001G425200 expressed protein -
10 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
11 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
12 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
13 Sobic.006G091850 - -
14 Sobic.008G125100 Mur ligase family protein, putative, expressed -
15 Sobic.004G145600 expressed protein -
16 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
17 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
18 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
19 Sobic.004G229000 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
20 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -


Gene co-expression network
sample Sobic003G304800 Sobic003G304800 Sobic009G122900 Sobic009G122900 Sobic003G304800--Sobic009G122900 Sobic007G010200 Sobic007G010200 Sobic003G304800--Sobic007G010200 Sobic001G472100 Sobic001G472100 Sobic003G304800--Sobic001G472100 Sobic008G112100 Sobic008G112100 Sobic003G304800--Sobic008G112100 Sobic003G331000 Sobic003G331000 Sobic003G304800--Sobic003G331000 Sobic007G036800 Sobic007G036800 Sobic003G304800--Sobic007G036800 Sobic009G060400 Sobic009G060400 Sobic003G304800--Sobic009G060400 Sobic005G160200 Sobic005G160200 Sobic003G304800--Sobic005G160200 Sobic001G425200 Sobic001G425200 Sobic003G304800--Sobic001G425200 Sobic009G122900--Sobic003G304800 Sobic009G122900--Sobic003G331000 Sobic008G125100 Sobic008G125100 Sobic009G122900--Sobic008G125100 Sobic001G242300 Sobic001G242300 Sobic009G122900--Sobic001G242300 Sobic003G028400 Sobic003G028400 Sobic009G122900--Sobic003G028400 Sobic001G296800 Sobic001G296800 Sobic009G122900--Sobic001G296800 Sobic003G298900 Sobic003G298900 Sobic009G122900--Sobic003G298900 Sobic005G064100 Sobic005G064100 Sobic009G122900--Sobic005G064100 Sobic009G122900--Sobic005G160200 Sobic004G229000 Sobic004G229000 Sobic007G010200--Sobic004G229000 Sobic007G010200--Sobic008G112100 Sobic007G031100 Sobic007G031100 Sobic007G010200--Sobic007G031100 Sobic007G010200--Sobic007G036800 Sobic007G140100 Sobic007G140100 Sobic007G010200--Sobic007G140100 Sobic009G054400 Sobic009G054400 Sobic007G010200--Sobic009G054400 Sobic007G010200--Sobic003G304800 Sobic001G309200 Sobic001G309200 Sobic007G010200--Sobic001G309200 Sobic010G018900 Sobic010G018900 Sobic007G010200--Sobic010G018900 Sobic005G040900 Sobic005G040900 Sobic001G472100--Sobic005G040900 Sobic009G059400 Sobic009G059400 Sobic001G472100--Sobic009G059400 Sobic005G198200 Sobic005G198200 Sobic001G472100--Sobic005G198200 Sobic009G125000 Sobic009G125000 Sobic001G472100--Sobic009G125000 Sobic008G058800 Sobic008G058800 Sobic001G472100--Sobic008G058800 Sobic004G345400 Sobic004G345400 Sobic001G472100--Sobic004G345400 Sobic009G129600 Sobic009G129600 Sobic001G472100--Sobic009G129600 Sobic007G139400 Sobic007G139400 Sobic001G472100--Sobic007G139400 Sobic003G354100 Sobic003G354100 Sobic001G472100--Sobic003G354100 Sobic008G112100--Sobic009G054400 Sobic003G397100 Sobic003G397100 Sobic008G112100--Sobic003G397100 Sobic008G112100--Sobic007G036800 Sobic008G112100--Sobic007G010200 Sobic001G433600 Sobic001G433600 Sobic008G112100--Sobic001G433600 Sobic008G087200 Sobic008G087200 Sobic008G112100--Sobic008G087200 Sobic002G123600 Sobic002G123600 Sobic008G112100--Sobic002G123600 Sobic004G293400 Sobic004G293400 Sobic008G112100--Sobic004G293400 Sobic001G381500 Sobic001G381500 Sobic008G112100--Sobic001G381500 Sobic003G259600 Sobic003G259600 Sobic003G331000--Sobic003G259600 Sobic003G331000--Sobic009G122900 Sobic003G331000--Sobic003G028400 Sobic003G331000--Sobic002G123600 Sobic001G123600 Sobic001G123600 Sobic003G331000--Sobic001G123600 Sobic003G331000--Sobic001G242300 Sobic003G331000--Sobic005G160200 Sobic003G331000--Sobic003G298900 Sobic003G360300 Sobic003G360300 Sobic003G331000--Sobic003G360300 Sobic004G129500 Sobic004G129500 Sobic007G036800--Sobic004G129500 Sobic010G103500 Sobic010G103500 Sobic007G036800--Sobic010G103500 Sobic004G145600 Sobic004G145600 Sobic007G036800--Sobic004G145600 Sobic007G036800--Sobic008G112100 Sobic010G059700 Sobic010G059700 Sobic007G036800--Sobic010G059700 Sobic007G036800--Sobic007G010200 Sobic004G350200 Sobic004G350200 Sobic007G036800--Sobic004G350200 Sobic007G036800--Sobic002G123600 Sobic004G256300 Sobic004G256300 Sobic007G036800--Sobic004G256300 Sobic006G245700 Sobic006G245700 Sobic009G060400--Sobic006G245700 Sobic009G060400--Sobic007G036800 Sobic010G256200 Sobic010G256200 Sobic009G060400--Sobic010G256200 Sobic001G346700 Sobic001G346700 Sobic009G060400--Sobic001G346700 Sobic009G060400--Sobic001G425200 Sobic009G060400--Sobic003G304800 Sobic001G115500 Sobic001G115500 Sobic009G060400--Sobic001G115500 Sobic006G091850 Sobic006G091850 Sobic009G060400--Sobic006G091850 Sobic008G125000 Sobic008G125000 Sobic009G060400--Sobic008G125000 Sobic004G014100 Sobic004G014100 Sobic005G160200--Sobic004G014100 Sobic003G411700 Sobic003G411700 Sobic005G160200--Sobic003G411700 Sobic003G343200 Sobic003G343200 Sobic005G160200--Sobic003G343200 Sobic005G160200--Sobic006G091850 Sobic002G315100 Sobic002G315100 Sobic005G160200--Sobic002G315100 Sobic010G038900 Sobic010G038900 Sobic005G160200--Sobic010G038900 Sobic010G257500 Sobic010G257500 Sobic005G160200--Sobic010G257500 Sobic001G534400 Sobic001G534400 Sobic005G160200--Sobic001G534400 Sobic005G160200--Sobic004G350200 Sobic001G425200--Sobic003G411700 Sobic004G041100 Sobic004G041100 Sobic001G425200--Sobic004G041100 Sobic001G425200--Sobic010G103500 Sobic001G212600 Sobic001G212600 Sobic001G425200--Sobic001G212600 Sobic002G271400 Sobic002G271400 Sobic001G425200--Sobic002G271400 Sobic004G306100 Sobic004G306100 Sobic001G425200--Sobic004G306100 Sobic003G336900 Sobic003G336900 Sobic001G425200--Sobic003G336900 Sobic001G425200--Sobic005G160200 Sobic001G425200--Sobic003G298900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.