Gene annotation
Transcriptome id Sobic.003G109200.1,Sobic.003G109200.2
Synonym Sb03g009180
Functional annotation expressed protein
UniProt C5XFL9
Pfam -
Panther DB PTHR36775 PTHR36775:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02425 : -
RAP-DB (Rice) LOC_Os01g21410.1 : expressed protein
MaizeGDB (Corn) Zm00025a023877 , Zm00025a051649 , Zm00025a043351
Brachypodium KQK04149
Barley -
Wheat TraesCS3A02G196100
Populus -


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cDNA sequences
Sobic.003G109200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
2 Sobic.004G208100 expressed protein -
3 Sobic.002G387800 - K12456: anaphase-promoting complex subunit 13
4 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
5 Sobic.009G169200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
6 Sobic.009G232500 expressed protein -
7 Sobic.006G095300 expressed protein -
8 Sobic.001G432100 expressed protein -
9 Sobic.003G297200 lipase, putative, expressed -
10 Sobic.004G229000 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
11 Sobic.006G271000 mis12 protein, expressed -
12 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
13 Sobic.002G315400 expressed protein -
14 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
15 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
16 Sobic.007G036800 xylosyltransferase, putative, expressed -
17 Sobic.004G153000 expressed protein -
18 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
19 Sobic.004G129500 expressed protein -
20 Sobic.004G077900 YIF1B, putative, expressed -


Gene co-expression network
sample Sobic003G109200 Sobic003G109200 Sobic001G107300 Sobic001G107300 Sobic003G109200--Sobic001G107300 Sobic004G208100 Sobic004G208100 Sobic003G109200--Sobic004G208100 Sobic002G387800 Sobic002G387800 Sobic003G109200--Sobic002G387800 Sobic001G521100 Sobic001G521100 Sobic003G109200--Sobic001G521100 Sobic009G169200 Sobic009G169200 Sobic003G109200--Sobic009G169200 Sobic009G232500 Sobic009G232500 Sobic003G109200--Sobic009G232500 Sobic006G095300 Sobic006G095300 Sobic003G109200--Sobic006G095300 Sobic001G432100 Sobic001G432100 Sobic003G109200--Sobic001G432100 Sobic003G297200 Sobic003G297200 Sobic003G109200--Sobic003G297200 Sobic004G343600 Sobic004G343600 Sobic001G107300--Sobic004G343600 Sobic001G505000 Sobic001G505000 Sobic001G107300--Sobic001G505000 Sobic004G047500 Sobic004G047500 Sobic001G107300--Sobic004G047500 Sobic002G353500 Sobic002G353500 Sobic001G107300--Sobic002G353500 Sobic006G013900 Sobic006G013900 Sobic001G107300--Sobic006G013900 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G436300 Sobic001G436300 Sobic001G107300--Sobic001G436300 Sobic010G021900 Sobic010G021900 Sobic004G208100--Sobic010G021900 Sobic003G444300 Sobic003G444300 Sobic004G208100--Sobic003G444300 Sobic002G303800 Sobic002G303800 Sobic004G208100--Sobic002G303800 Sobic001G238900 Sobic001G238900 Sobic004G208100--Sobic001G238900 Sobic002G133000 Sobic002G133000 Sobic004G208100--Sobic002G133000 Sobic001G169800 Sobic001G169800 Sobic004G208100--Sobic001G169800 Sobic001G122100 Sobic001G122100 Sobic004G208100--Sobic001G122100 Sobic001G235700 Sobic001G235700 Sobic004G208100--Sobic001G235700 Sobic002G246900 Sobic002G246900 Sobic004G208100--Sobic002G246900 Sobic009G211900 Sobic009G211900 Sobic002G387800--Sobic009G211900 Sobic009G206600 Sobic009G206600 Sobic002G387800--Sobic009G206600 Sobic003G074900 Sobic003G074900 Sobic002G387800--Sobic003G074900 Sobic006G203900 Sobic006G203900 Sobic002G387800--Sobic006G203900 Sobic002G217500 Sobic002G217500 Sobic002G387800--Sobic002G217500 Sobic003G016300 Sobic003G016300 Sobic002G387800--Sobic003G016300 Sobic001G192700 Sobic001G192700 Sobic002G387800--Sobic001G192700 Sobic008G084100 Sobic008G084100 Sobic002G387800--Sobic008G084100 Sobic006G124300 Sobic006G124300 Sobic002G387800--Sobic006G124300 Sobic002G113400 Sobic002G113400 Sobic001G521100--Sobic002G113400 Sobic001G521100--Sobic002G246900 Sobic002G351100 Sobic002G351100 Sobic001G521100--Sobic002G351100 Sobic002G315400 Sobic002G315400 Sobic001G521100--Sobic002G315400 Sobic001G025900 Sobic001G025900 Sobic001G521100--Sobic001G025900 Sobic006G119300 Sobic006G119300 Sobic001G521100--Sobic006G119300 Sobic006G236800 Sobic006G236800 Sobic001G521100--Sobic006G236800 Sobic003G442300 Sobic003G442300 Sobic001G521100--Sobic003G442300 Sobic001G521100--Sobic003G297200 Sobic003G118400 Sobic003G118400 Sobic009G169200--Sobic003G118400 Sobic006G143500 Sobic006G143500 Sobic009G169200--Sobic006G143500 Sobic009G169200--Sobic003G109200 Sobic007G043400 Sobic007G043400 Sobic009G169200--Sobic007G043400 Sobic001G286100 Sobic001G286100 Sobic009G169200--Sobic001G286100 Sobic001G285300 Sobic001G285300 Sobic009G169200--Sobic001G285300 Sobic006G029400 Sobic006G029400 Sobic009G169200--Sobic006G029400 Sobic002G054000 Sobic002G054000 Sobic009G169200--Sobic002G054000 Sobic002G304400 Sobic002G304400 Sobic009G169200--Sobic002G304400 Sobic003G410200 Sobic003G410200 Sobic009G232500--Sobic003G410200 Sobic009G232500--Sobic001G107300 Sobic009G232500--Sobic003G109200 Sobic002G374200 Sobic002G374200 Sobic009G232500--Sobic002G374200 Sobic006G181700 Sobic006G181700 Sobic009G232500--Sobic006G181700 Sobic001G478700 Sobic001G478700 Sobic009G232500--Sobic001G478700 Sobic007G010200 Sobic007G010200 Sobic009G232500--Sobic007G010200 Sobic001G239100 Sobic001G239100 Sobic009G232500--Sobic001G239100 Sobic007G031100 Sobic007G031100 Sobic009G232500--Sobic007G031100 Sobic001G506300 Sobic001G506300 Sobic006G095300--Sobic001G506300 Sobic003G041400 Sobic003G041400 Sobic006G095300--Sobic003G041400 Sobic001G196800 Sobic001G196800 Sobic006G095300--Sobic001G196800 Sobic006G127200 Sobic006G127200 Sobic006G095300--Sobic006G127200 Sobic006G095300--Sobic001G521100 Sobic010G165800 Sobic010G165800 Sobic006G095300--Sobic010G165800 Sobic006G095300--Sobic002G315400 Sobic010G257500 Sobic010G257500 Sobic006G095300--Sobic010G257500 Sobic006G095300--Sobic003G297200 Sobic009G218000 Sobic009G218000 Sobic001G432100--Sobic009G218000 Sobic001G432100--Sobic007G010200 Sobic001G432100--Sobic007G031100 Sobic007G036800 Sobic007G036800 Sobic001G432100--Sobic007G036800 Sobic004G145600 Sobic004G145600 Sobic001G432100--Sobic004G145600 Sobic002G280900 Sobic002G280900 Sobic001G432100--Sobic002G280900 Sobic010G018900 Sobic010G018900 Sobic001G432100--Sobic010G018900 Sobic004G229000 Sobic004G229000 Sobic001G432100--Sobic004G229000 Sobic004G354100 Sobic004G354100 Sobic001G432100--Sobic004G354100 Sobic003G297200--Sobic002G351100 Sobic001G300400 Sobic001G300400 Sobic003G297200--Sobic001G300400 Sobic003G297200--Sobic006G236800 Sobic003G297200--Sobic001G521100 Sobic003G297200--Sobic002G246900 Sobic003G297200--Sobic002G315400 Sobic007G084200 Sobic007G084200 Sobic003G297200--Sobic007G084200 Sobic003G244000 Sobic003G244000 Sobic003G297200--Sobic003G244000 Sobic002G190000 Sobic002G190000 Sobic003G297200--Sobic002G190000
Octagon: transcription factors


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