Gene annotation
Transcriptome id Sobic.004G077900.2,Sobic.004G077900.1
Synonym Sb04g006430
Functional annotation YIF1B, putative, expressed
UniProt C5XXF6
Pfam PF03878
Panther DB PTHR14083 PTHR14083:SF4
NCBI CDD KOG3094; Predicted membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G30890 : Integral membrane HRF1 family protein
RAP-DB (Rice) LOC_Os06g41590.3 : YIF1B, putative, expressed
MaizeGDB (Corn) Zm00025a034677
Brachypodium KQJ93815 , KQK17643
Barley HORVU7Hr1G094010.18 , HORVU7Hr1G094010.13 , HORVU7Hr1G094010.10 , HORVU7Hr1G094010.17 , HORVU7Hr1G094010.30 , HORVU7Hr1G094010.15 , HORVU7Hr1G094010.14 , HORVU7Hr1G094010.22 , HORVU7Hr1G094010.23 , HORVU7Hr1G094010.20 , HORVU7Hr1G094010.21 , HORVU7Hr1G094010.26 , HORVU7Hr1G094010.27 , HORVU7Hr1G094010.24 , HORVU7Hr1G094010.25 , HORVU7Hr1G094010.29 , HORVU6Hr1G034030.2 , HORVU6Hr1G034030.3 , HORVU6Hr1G034030.1 , HORVU7Hr1G094010.9 , HORVU7Hr1G094010.8 , HORVU7Hr1G094010.3 , HORVU7Hr1G094010.2 , HORVU7Hr1G094010.1 , HORVU7Hr1G094010.7 , HORVU7Hr1G094010.5 , HORVU7Hr1G094010.4
Wheat TraesCS7D02G394000 , TraesCS6B02G195300 , TraesCS7A02G400200 , TraesCS6A02G167600 , TraesCS6D02G156600 , TraesCS7B02G300300
Populus -


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cDNA sequences
Sobic.004G077900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G315400 expressed protein -
2 Sobic.008G165200 OsFBX358 - F-box domain containing protein, expressed -
3 Sobic.006G267800 WD-40 repeat family protein, putative, expressed -
4 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
5 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
6 Sobic.003G109200 expressed protein -
7 Sobic.003G442300 NAD dependent epimerase/dehydratase family protein, putative, expressed K12449: UDP-apiose/xylose synthase
8 Sobic.001G401600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
9 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
10 Sobic.009G131200 expressed protein -
11 Sobic.006G095300 expressed protein -
12 Sobic.003G297200 lipase, putative, expressed -
13 Sobic.001G336050 - K18635: protein SPIRAL1 and related proteins
14 Sobic.001G212600 a_IG002N01.7, putative, expressed -
15 Sobic.010G103500 ATMAP70 protein, putative, expressed -
16 Sobic.007G036800 xylosyltransferase, putative, expressed -
17 Sobic.008G034200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
18 Sobic.010G052400 SET domain containing protein, expressed K11430: [histone H3]-lysine27 N-trimethyltransferase EZH2
19 Sobic.004G306100 expressed protein -
20 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -


Gene co-expression network
sample Sobic004G077900 Sobic004G077900 Sobic002G315400 Sobic002G315400 Sobic004G077900--Sobic002G315400 Sobic008G165200 Sobic008G165200 Sobic004G077900--Sobic008G165200 Sobic006G267800 Sobic006G267800 Sobic004G077900--Sobic006G267800 Sobic001G286100 Sobic001G286100 Sobic004G077900--Sobic001G286100 Sobic001G521100 Sobic001G521100 Sobic004G077900--Sobic001G521100 Sobic003G109200 Sobic003G109200 Sobic004G077900--Sobic003G109200 Sobic003G442300 Sobic003G442300 Sobic004G077900--Sobic003G442300 Sobic001G401600 Sobic001G401600 Sobic004G077900--Sobic001G401600 Sobic002G236700 Sobic002G236700 Sobic004G077900--Sobic002G236700 Sobic002G315400--Sobic001G521100 Sobic002G092200 Sobic002G092200 Sobic002G315400--Sobic002G092200 Sobic002G351100 Sobic002G351100 Sobic002G315400--Sobic002G351100 Sobic002G315400--Sobic002G236700 Sobic009G109300 Sobic009G109300 Sobic002G315400--Sobic009G109300 Sobic003G412800 Sobic003G412800 Sobic002G315400--Sobic003G412800 Sobic003G297200 Sobic003G297200 Sobic002G315400--Sobic003G297200 Sobic002G246900 Sobic002G246900 Sobic002G315400--Sobic002G246900 Sobic007G112100 Sobic007G112100 Sobic002G315400--Sobic007G112100 Sobic001G212600 Sobic001G212600 Sobic008G165200--Sobic001G212600 Sobic007G031300 Sobic007G031300 Sobic008G165200--Sobic007G031300 Sobic010G020900 Sobic010G020900 Sobic008G165200--Sobic010G020900 Sobic008G169400 Sobic008G169400 Sobic008G165200--Sobic008G169400 Sobic003G153900 Sobic003G153900 Sobic008G165200--Sobic003G153900 Sobic001G296800 Sobic001G296800 Sobic008G165200--Sobic001G296800 Sobic009G024900 Sobic009G024900 Sobic008G165200--Sobic009G024900 Sobic001G079900 Sobic001G079900 Sobic008G165200--Sobic001G079900 Sobic003G351900 Sobic003G351900 Sobic008G165200--Sobic003G351900 Sobic007G084200 Sobic007G084200 Sobic006G267800--Sobic007G084200 Sobic001G369800 Sobic001G369800 Sobic006G267800--Sobic001G369800 Sobic006G267800--Sobic002G351100 Sobic002G284100 Sobic002G284100 Sobic006G267800--Sobic002G284100 Sobic010G079100 Sobic010G079100 Sobic006G267800--Sobic010G079100 Sobic003G226700 Sobic003G226700 Sobic006G267800--Sobic003G226700 Sobic001G261549 Sobic001G261549 Sobic006G267800--Sobic001G261549 Sobic003G389100 Sobic003G389100 Sobic006G267800--Sobic003G389100 Sobic001G487200 Sobic001G487200 Sobic006G267800--Sobic001G487200 Sobic004G069400 Sobic004G069400 Sobic001G286100--Sobic004G069400 Sobic008G118300 Sobic008G118300 Sobic001G286100--Sobic008G118300 Sobic003G418400 Sobic003G418400 Sobic001G286100--Sobic003G418400 Sobic007G201000 Sobic007G201000 Sobic001G286100--Sobic007G201000 Sobic010G250000 Sobic010G250000 Sobic001G286100--Sobic010G250000 Sobic001G135200 Sobic001G135200 Sobic001G286100--Sobic001G135200 Sobic006G271000 Sobic006G271000 Sobic001G286100--Sobic006G271000 Sobic009G063800 Sobic009G063800 Sobic001G286100--Sobic009G063800 Sobic001G309200 Sobic001G309200 Sobic001G286100--Sobic001G309200 Sobic002G113400 Sobic002G113400 Sobic001G521100--Sobic002G113400 Sobic001G521100--Sobic002G246900 Sobic001G521100--Sobic002G351100 Sobic001G521100--Sobic002G315400 Sobic001G025900 Sobic001G025900 Sobic001G521100--Sobic001G025900 Sobic006G119300 Sobic006G119300 Sobic001G521100--Sobic006G119300 Sobic006G236800 Sobic006G236800 Sobic001G521100--Sobic006G236800 Sobic001G521100--Sobic003G442300 Sobic001G521100--Sobic003G297200 Sobic001G107300 Sobic001G107300 Sobic003G109200--Sobic001G107300 Sobic004G208100 Sobic004G208100 Sobic003G109200--Sobic004G208100 Sobic002G387800 Sobic002G387800 Sobic003G109200--Sobic002G387800 Sobic003G109200--Sobic001G521100 Sobic009G169200 Sobic009G169200 Sobic003G109200--Sobic009G169200 Sobic009G232500 Sobic009G232500 Sobic003G109200--Sobic009G232500 Sobic006G095300 Sobic006G095300 Sobic003G109200--Sobic006G095300 Sobic001G432100 Sobic001G432100 Sobic003G109200--Sobic001G432100 Sobic003G109200--Sobic003G297200 Sobic003G442300--Sobic001G401600 Sobic003G442300--Sobic002G246900 Sobic006G218600 Sobic006G218600 Sobic003G442300--Sobic006G218600 Sobic009G181500 Sobic009G181500 Sobic003G442300--Sobic009G181500 Sobic003G442300--Sobic001G521100 Sobic010G051100 Sobic010G051100 Sobic003G442300--Sobic010G051100 Sobic003G442300--Sobic001G025900 Sobic007G176800 Sobic007G176800 Sobic003G442300--Sobic007G176800 Sobic006G102900 Sobic006G102900 Sobic003G442300--Sobic006G102900 Sobic001G401600--Sobic003G442300 Sobic001G401600--Sobic009G181500 Sobic001G401600--Sobic002G246900 Sobic001G401600--Sobic006G102900 Sobic004G047100 Sobic004G047100 Sobic001G401600--Sobic004G047100 Sobic001G401600--Sobic010G051100 Sobic003G444200 Sobic003G444200 Sobic001G401600--Sobic003G444200 Sobic010G105400 Sobic010G105400 Sobic001G401600--Sobic010G105400 Sobic003G410600 Sobic003G410600 Sobic001G401600--Sobic003G410600 Sobic002G236700--Sobic002G246900 Sobic001G140700 Sobic001G140700 Sobic002G236700--Sobic001G140700 Sobic001G532800 Sobic001G532800 Sobic002G236700--Sobic001G532800 Sobic003G107200 Sobic003G107200 Sobic002G236700--Sobic003G107200 Sobic002G236700--Sobic009G109300 Sobic002G236700--Sobic007G112100 Sobic002G236700--Sobic002G315400 Sobic007G218100 Sobic007G218100 Sobic002G236700--Sobic007G218100 Sobic010G191000 Sobic010G191000 Sobic002G236700--Sobic010G191000
Octagon: transcription factors


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