Gene annotation
Transcriptome id Sobic.006G267800.1
Synonym Sb06g033000
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt C5YAJ5
Pfam PF00400
Panther DB PTHR14221 PTHR14221:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G15470 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os04g58180.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a057388 , Zm00025a009286 , Zm00025a021003
Brachypodium KQJ85310
Barley HORVU2Hr1G119220.11 , HORVU2Hr1G119220.12 , HORVU2Hr1G119220.1 , HORVU2Hr1G119220.3 , HORVU2Hr1G119220.2 , HORVU2Hr1G119220.5 , HORVU2Hr1G119220.4 , HORVU2Hr1G119220.7 , HORVU2Hr1G119220.6 , HORVU2Hr1G119220.9 , HORVU2Hr1G119220.8 , HORVU2Hr1G119220.14 , HORVU2Hr1G119220.13 , HORVU2Hr1G119220.10
Wheat TraesCS2B02G592200 , TraesCS2A02G591500 , TraesCS2D02G562800
Populus -


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cDNA sequences
Sobic.006G267800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G084200 expressed protein -
2 Sobic.001G369800 monocopper oxidase, putative, expressed -
3 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
4 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
5 Sobic.010G079100 lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed -
6 Sobic.003G226700 kinesin motor domain containing protein, putative, expressed K10393: KIF2_24, kinesin family member 2/24
7 Sobic.001G261549 - -
8 Sobic.003G389100 formin-like protein 1 precursor, putative, expressed -
9 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
10 Sobic.002G253900 growth regulator related protein, putative, expressed -
11 Sobic.003G412800 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
12 Sobic.003G345000 CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
13 Sobic.002G315400 expressed protein -
14 Sobic.003G297200 lipase, putative, expressed -
15 Sobic.004G077900 YIF1B, putative, expressed -
16 Sobic.001G300400 expansin precursor, putative, expressed -
17 Sobic.010G003300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
18 Sobic.007G214700 fasciclin domain containing protein, expressed -
19 Sobic.003G240100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -


Gene co-expression network
sample Sobic006G267800 Sobic006G267800 Sobic007G084200 Sobic007G084200 Sobic006G267800--Sobic007G084200 Sobic001G369800 Sobic001G369800 Sobic006G267800--Sobic001G369800 Sobic002G351100 Sobic002G351100 Sobic006G267800--Sobic002G351100 Sobic002G284100 Sobic002G284100 Sobic006G267800--Sobic002G284100 Sobic010G079100 Sobic010G079100 Sobic006G267800--Sobic010G079100 Sobic003G226700 Sobic003G226700 Sobic006G267800--Sobic003G226700 Sobic001G261549 Sobic001G261549 Sobic006G267800--Sobic001G261549 Sobic003G389100 Sobic003G389100 Sobic006G267800--Sobic003G389100 Sobic001G487200 Sobic001G487200 Sobic006G267800--Sobic001G487200 Sobic007G084200--Sobic003G226700 Sobic009G212100 Sobic009G212100 Sobic007G084200--Sobic009G212100 Sobic003G420300 Sobic003G420300 Sobic007G084200--Sobic003G420300 Sobic007G084200--Sobic001G487200 Sobic003G345000 Sobic003G345000 Sobic007G084200--Sobic003G345000 Sobic003G292700 Sobic003G292700 Sobic007G084200--Sobic003G292700 Sobic006G218900 Sobic006G218900 Sobic007G084200--Sobic006G218900 Sobic007G084200--Sobic001G369800 Sobic004G315700 Sobic004G315700 Sobic007G084200--Sobic004G315700 Sobic001G369800--Sobic002G284100 Sobic001G369800--Sobic001G487200 Sobic001G123100 Sobic001G123100 Sobic001G369800--Sobic001G123100 Sobic001G540700 Sobic001G540700 Sobic001G369800--Sobic001G540700 Sobic001G369800--Sobic006G218900 Sobic001G369800--Sobic009G212100 Sobic003G283600 Sobic003G283600 Sobic001G369800--Sobic003G283600 Sobic003G351900 Sobic003G351900 Sobic001G369800--Sobic003G351900 Sobic001G212600 Sobic001G212600 Sobic001G369800--Sobic001G212600 Sobic001G300400 Sobic001G300400 Sobic002G351100--Sobic001G300400 Sobic003G297200 Sobic003G297200 Sobic002G351100--Sobic003G297200 Sobic001G521100 Sobic001G521100 Sobic002G351100--Sobic001G521100 Sobic003G244000 Sobic003G244000 Sobic002G351100--Sobic003G244000 Sobic002G315400 Sobic002G315400 Sobic002G351100--Sobic002G315400 Sobic009G194900 Sobic009G194900 Sobic002G351100--Sobic009G194900 Sobic001G440900 Sobic001G440900 Sobic002G351100--Sobic001G440900 Sobic002G246900 Sobic002G246900 Sobic002G351100--Sobic002G246900 Sobic001G238900 Sobic001G238900 Sobic002G351100--Sobic001G238900 Sobic006G272800 Sobic006G272800 Sobic002G284100--Sobic006G272800 Sobic004G267600 Sobic004G267600 Sobic002G284100--Sobic004G267600 Sobic002G027600 Sobic002G027600 Sobic002G284100--Sobic002G027600 Sobic002G284100--Sobic001G369800 Sobic002G284100--Sobic001G123100 Sobic002G284100--Sobic001G540700 Sobic010G086000 Sobic010G086000 Sobic002G284100--Sobic010G086000 Sobic009G172950 Sobic009G172950 Sobic002G284100--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic002G284100--Sobic006G142500 Sobic003G289800 Sobic003G289800 Sobic010G079100--Sobic003G289800 Sobic003G412800 Sobic003G412800 Sobic010G079100--Sobic003G412800 Sobic010G079100--Sobic001G369800 Sobic010G079100--Sobic009G172950 Sobic010G079100--Sobic003G389100 Sobic001G169800 Sobic001G169800 Sobic010G079100--Sobic001G169800 Sobic003G183700 Sobic003G183700 Sobic010G079100--Sobic003G183700 Sobic001G051300 Sobic001G051300 Sobic010G079100--Sobic001G051300 Sobic003G179500 Sobic003G179500 Sobic010G079100--Sobic003G179500 Sobic003G226700--Sobic007G084200 Sobic003G226700--Sobic003G420300 Sobic003G226700--Sobic003G292700 Sobic001G425700 Sobic001G425700 Sobic003G226700--Sobic001G425700 Sobic003G226700--Sobic003G289800 Sobic003G226700--Sobic009G212100 Sobic003G226700--Sobic001G487200 Sobic003G226700--Sobic004G315700 Sobic003G024000 Sobic003G024000 Sobic003G226700--Sobic003G024000 Sobic006G102900 Sobic006G102900 Sobic001G261549--Sobic006G102900 Sobic004G285900 Sobic004G285900 Sobic001G261549--Sobic004G285900 Sobic009G189200 Sobic009G189200 Sobic001G261549--Sobic009G189200 Sobic006G191700 Sobic006G191700 Sobic001G261549--Sobic006G191700 Sobic001G261549--Sobic009G194900 Sobic003G107200 Sobic003G107200 Sobic001G261549--Sobic003G107200 Sobic001G078600 Sobic001G078600 Sobic001G261549--Sobic001G078600 Sobic007G154500 Sobic007G154500 Sobic001G261549--Sobic007G154500 Sobic008G096200 Sobic008G096200 Sobic001G261549--Sobic008G096200 Sobic003G389100--Sobic003G289800 Sobic003G389100--Sobic003G226700 Sobic003G389100--Sobic010G079100 Sobic003G389100--Sobic001G051300 Sobic003G389100--Sobic007G084200 Sobic003G389100--Sobic003G420300 Sobic002G276600 Sobic002G276600 Sobic003G389100--Sobic002G276600 Sobic007G139500 Sobic007G139500 Sobic003G389100--Sobic007G139500 Sobic003G389100--Sobic001G425700 Sobic001G487200--Sobic004G315700 Sobic001G487200--Sobic009G212100 Sobic001G487200--Sobic001G369800 Sobic001G231200 Sobic001G231200 Sobic001G487200--Sobic001G231200 Sobic002G370400 Sobic002G370400 Sobic001G487200--Sobic002G370400 Sobic001G487200--Sobic003G226700 Sobic001G487200--Sobic001G540700 Sobic001G296800 Sobic001G296800 Sobic001G487200--Sobic001G296800 Sobic001G487200--Sobic007G084200
Octagon: transcription factors


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