Gene annotation
Transcriptome id Sobic.004G254600.1
Synonym Sb04g029360
Functional annotation RNA methyltransferase domain-containing protein 2, putative, expressed
UniProt C5XZR0
Pfam PF01746
Panther DB PTHR13563 PTHR13563:SF13
NCBI CDD -
KEGG Orthology K15445; TRMT10, TRM10, tRNA (guanine9-N1)-methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47680 : -
RAP-DB (Rice) LOC_Os02g49360.1 : RNA methyltransferase domain-containing protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a019989 , Zm00025a009759 , Zm00025a034681 , Zm00025a021877
Brachypodium KQK01521
Barley HORVU6Hr1G072070.11
Wheat TraesCS6B02G316400 , TraesCS6A02G287200 , TraesCS6D02G267700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G152000 expressed protein -
2 Sobic.009G250900 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
3 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
4 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
5 Sobic.008G169200 SRP40, C-terminal domain containing protein, expressed -
6 Sobic.001G008800 expressed protein -
7 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
8 Sobic.001G099800 nucleic acid binding protein, putative, expressed -
9 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
10 Sobic.001G157300 expressed protein K14793: ribosomal RNA-processing protein 9
11 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
12 Sobic.001G132900 expressed protein -
13 Sobic.006G035500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
14 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
15 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
16 Sobic.010G085600 peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed K05864: PPID, peptidyl-prolyl isomerase D
17 Sobic.008G051100 RNA polymerase II subunit A C-terminal domain phosphatase ssu72, putative, expressed K15544: RNA polymerase II subunit A C-terminal domain phosphatase SSU72
18 Sobic.009G209100 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
19 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
20 Sobic.010G103200 ThiF family domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G254600 Sobic004G254600 Sobic006G152000 Sobic006G152000 Sobic004G254600--Sobic006G152000 Sobic009G250900 Sobic009G250900 Sobic004G254600--Sobic009G250900 Sobic007G114000 Sobic007G114000 Sobic004G254600--Sobic007G114000 Sobic002G238000 Sobic002G238000 Sobic004G254600--Sobic002G238000 Sobic008G169200 Sobic008G169200 Sobic004G254600--Sobic008G169200 Sobic001G008800 Sobic001G008800 Sobic004G254600--Sobic001G008800 Sobic009G045900 Sobic009G045900 Sobic004G254600--Sobic009G045900 Sobic001G099800 Sobic001G099800 Sobic004G254600--Sobic001G099800 Sobic004G256000 Sobic004G256000 Sobic004G254600--Sobic004G256000 Sobic006G152000--Sobic004G254600 Sobic010G103200 Sobic010G103200 Sobic006G152000--Sobic010G103200 Sobic006G152000--Sobic007G114000 Sobic006G035500 Sobic006G035500 Sobic006G152000--Sobic006G035500 Sobic006G152000--Sobic009G250900 Sobic001G486700 Sobic001G486700 Sobic006G152000--Sobic001G486700 Sobic008G118600 Sobic008G118600 Sobic006G152000--Sobic008G118600 Sobic001G537500 Sobic001G537500 Sobic006G152000--Sobic001G537500 Sobic002G246700 Sobic002G246700 Sobic006G152000--Sobic002G246700 Sobic003G037000 Sobic003G037000 Sobic009G250900--Sobic003G037000 Sobic001G251100 Sobic001G251100 Sobic009G250900--Sobic001G251100 Sobic009G250900--Sobic004G254600 Sobic010G230600 Sobic010G230600 Sobic009G250900--Sobic010G230600 Sobic004G167200 Sobic004G167200 Sobic009G250900--Sobic004G167200 Sobic001G090100 Sobic001G090100 Sobic009G250900--Sobic001G090100 Sobic003G293300 Sobic003G293300 Sobic009G250900--Sobic003G293300 Sobic009G250900--Sobic001G537500 Sobic002G058700 Sobic002G058700 Sobic009G250900--Sobic002G058700 Sobic005G100900 Sobic005G100900 Sobic007G114000--Sobic005G100900 Sobic007G114000--Sobic006G035500 Sobic010G188000 Sobic010G188000 Sobic007G114000--Sobic010G188000 Sobic002G152900 Sobic002G152900 Sobic007G114000--Sobic002G152900 Sobic009G071700 Sobic009G071700 Sobic007G114000--Sobic009G071700 Sobic010G161525 Sobic010G161525 Sobic007G114000--Sobic010G161525 Sobic006G157000 Sobic006G157000 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic001G368100 Sobic001G368100 Sobic007G114000--Sobic001G368100 Sobic002G238000--Sobic005G100900 Sobic008G165900 Sobic008G165900 Sobic002G238000--Sobic008G165900 Sobic002G238000--Sobic009G071700 Sobic006G125900 Sobic006G125900 Sobic002G238000--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic002G238000--Sobic002G262100 Sobic010G228700 Sobic010G228700 Sobic002G238000--Sobic010G228700 Sobic001G224200 Sobic001G224200 Sobic002G238000--Sobic001G224200 Sobic002G092050 Sobic002G092050 Sobic002G238000--Sobic002G092050 Sobic004G268100 Sobic004G268100 Sobic002G238000--Sobic004G268100 Sobic008G169200--Sobic004G256000 Sobic009G249800 Sobic009G249800 Sobic008G169200--Sobic009G249800 Sobic008G169200--Sobic009G045900 Sobic002G047000 Sobic002G047000 Sobic008G169200--Sobic002G047000 Sobic010G236600 Sobic010G236600 Sobic008G169200--Sobic010G236600 Sobic006G269900 Sobic006G269900 Sobic008G169200--Sobic006G269900 Sobic004G252000 Sobic004G252000 Sobic008G169200--Sobic004G252000 Sobic010G233100 Sobic010G233100 Sobic008G169200--Sobic010G233100 Sobic002G234300 Sobic002G234300 Sobic008G169200--Sobic002G234300 Sobic001G129400 Sobic001G129400 Sobic001G008800--Sobic001G129400 Sobic003G326900 Sobic003G326900 Sobic001G008800--Sobic003G326900 Sobic001G132900 Sobic001G132900 Sobic001G008800--Sobic001G132900 Sobic003G003000 Sobic003G003000 Sobic001G008800--Sobic003G003000 Sobic004G136500 Sobic004G136500 Sobic001G008800--Sobic004G136500 Sobic004G117800 Sobic004G117800 Sobic001G008800--Sobic004G117800 Sobic001G144600 Sobic001G144600 Sobic001G008800--Sobic001G144600 Sobic006G087400 Sobic006G087400 Sobic001G008800--Sobic006G087400 Sobic001G451901 Sobic001G451901 Sobic001G008800--Sobic001G451901 Sobic008G135200 Sobic008G135200 Sobic009G045900--Sobic008G135200 Sobic009G045900--Sobic002G047000 Sobic009G045900--Sobic002G246700 Sobic002G408900 Sobic002G408900 Sobic009G045900--Sobic002G408900 Sobic009G045900--Sobic001G090100 Sobic003G314700 Sobic003G314700 Sobic009G045900--Sobic003G314700 Sobic010G206300 Sobic010G206300 Sobic009G045900--Sobic010G206300 Sobic001G248100 Sobic001G248100 Sobic009G045900--Sobic001G248100 Sobic009G045900--Sobic001G537500 Sobic003G058900 Sobic003G058900 Sobic001G099800--Sobic003G058900 Sobic001G136500 Sobic001G136500 Sobic001G099800--Sobic001G136500 Sobic001G099800--Sobic001G132900 Sobic001G280400 Sobic001G280400 Sobic001G099800--Sobic001G280400 Sobic004G206300 Sobic004G206300 Sobic001G099800--Sobic004G206300 Sobic008G008300 Sobic008G008300 Sobic001G099800--Sobic008G008300 Sobic008G125000 Sobic008G125000 Sobic001G099800--Sobic008G125000 Sobic001G099800--Sobic004G117800 Sobic008G051100 Sobic008G051100 Sobic001G099800--Sobic008G051100 Sobic004G256000--Sobic002G234300 Sobic002G112100 Sobic002G112100 Sobic004G256000--Sobic002G112100 Sobic009G246500 Sobic009G246500 Sobic004G256000--Sobic009G246500 Sobic002G071400 Sobic002G071400 Sobic004G256000--Sobic002G071400 Sobic004G256000--Sobic009G249800 Sobic004G256000--Sobic006G269900 Sobic004G256000--Sobic008G169200 Sobic008G049100 Sobic008G049100 Sobic004G256000--Sobic008G049100 Sobic008G160000 Sobic008G160000 Sobic004G256000--Sobic008G160000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.