Gene annotation
Transcriptome id Sobic.009G250900.2,Sobic.009G250900.1
Synonym Sb09g030150
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5YWL8 , A0A1Z5R410
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF223
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K17506; PPM1L, protein phosphatase 1L
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT5G53140 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os05g50970.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a044787 , Zm00025a036745
Brachypodium KQK04627
Barley HORVU6Hr1G050710.9 , HORVU6Hr1G050710.8 , HORVU6Hr1G050710.5 , HORVU6Hr1G050710.4 , HORVU6Hr1G050710.7 , HORVU6Hr1G050710.6 , HORVU6Hr1G050710.1 , HORVU6Hr1G050710.3 , HORVU6Hr1G050710.2 , HORVU1Hr1G093230.14 , HORVU1Hr1G093230.15 , HORVU1Hr1G093230.12 , HORVU1Hr1G093230.13 , HORVU1Hr1G093230.10 , HORVU1Hr1G093230.11 , HORVU1Hr1G093230.4 , HORVU1Hr1G093230.5 , HORVU1Hr1G093230.6 , HORVU1Hr1G093230.7 , HORVU1Hr1G093230.1 , HORVU1Hr1G093230.2 , HORVU1Hr1G093230.8 , HORVU1Hr1G093230.9 , HORVU6Hr1G050710.10
Wheat TraesCS6D02G188300 , TraesCS6B02G224900 , TraesCS6B02G224900 , TraesCS1B02G461900 , TraesCS1D02G436800 , TraesCS6A02G202800 , TraesCS6A02G202800 , TraesCS1A02G427000
Populus -


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cDNA sequences
Sobic.009G250900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G037000 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
3 Sobic.004G254600 RNA methyltransferase domain-containing protein 2, putative, expressed K15445: TRMT10, TRM10, tRNA (guanine9-N1)-methyltransferase
4 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
5 Sobic.004G167200 nucleoside-diphosphate-sugar epimerase, putative, expressed -
6 Sobic.001G090100 SRPK4, putative, expressed K08832: SRPK3, serine/threonine-protein kinase SRPK3
7 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
8 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
9 Sobic.002G058700 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
10 Sobic.003G138900 aminotransferase, putative, expressed -
11 Sobic.003G311900 CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed -
12 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
13 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
14 Sobic.001G049500 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
15 Sobic.008G135200 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
16 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
17 Sobic.009G174000 expressed protein -
18 Sobic.003G194100 mitochondrial carrier protein, putative, expressed K15084: SLC25A16, GDA, solute carrier family 25 (mitochondrial carrier protein), member 16
19 Sobic.001G404600 expressed protein K18270: Rab3 GTPase-activating protein catalytic subunit
20 Sobic.005G155800 actin polymerization factor, putative, expressed K05754: actin related protein 2/3 complex, subunit 5


Gene co-expression network
sample Sobic009G250900 Sobic009G250900 Sobic003G037000 Sobic003G037000 Sobic009G250900--Sobic003G037000 Sobic001G251100 Sobic001G251100 Sobic009G250900--Sobic001G251100 Sobic004G254600 Sobic004G254600 Sobic009G250900--Sobic004G254600 Sobic010G230600 Sobic010G230600 Sobic009G250900--Sobic010G230600 Sobic004G167200 Sobic004G167200 Sobic009G250900--Sobic004G167200 Sobic001G090100 Sobic001G090100 Sobic009G250900--Sobic001G090100 Sobic003G293300 Sobic003G293300 Sobic009G250900--Sobic003G293300 Sobic001G537500 Sobic001G537500 Sobic009G250900--Sobic001G537500 Sobic002G058700 Sobic002G058700 Sobic009G250900--Sobic002G058700 Sobic010G139500 Sobic010G139500 Sobic003G037000--Sobic010G139500 Sobic003G037000--Sobic009G250900 Sobic001G460500 Sobic001G460500 Sobic003G037000--Sobic001G460500 Sobic002G119600 Sobic002G119600 Sobic003G037000--Sobic002G119600 Sobic003G037000--Sobic001G090100 Sobic005G163700 Sobic005G163700 Sobic003G037000--Sobic005G163700 Sobic004G336300 Sobic004G336300 Sobic003G037000--Sobic004G336300 Sobic008G135200 Sobic008G135200 Sobic003G037000--Sobic008G135200 Sobic010G188000 Sobic010G188000 Sobic003G037000--Sobic010G188000 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic006G152000 Sobic006G152000 Sobic004G254600--Sobic006G152000 Sobic004G254600--Sobic009G250900 Sobic007G114000 Sobic007G114000 Sobic004G254600--Sobic007G114000 Sobic002G238000 Sobic002G238000 Sobic004G254600--Sobic002G238000 Sobic008G169200 Sobic008G169200 Sobic004G254600--Sobic008G169200 Sobic001G008800 Sobic001G008800 Sobic004G254600--Sobic001G008800 Sobic009G045900 Sobic009G045900 Sobic004G254600--Sobic009G045900 Sobic001G099800 Sobic001G099800 Sobic004G254600--Sobic001G099800 Sobic004G256000 Sobic004G256000 Sobic004G254600--Sobic004G256000 Sobic001G428800 Sobic001G428800 Sobic010G230600--Sobic001G428800 Sobic001G449900 Sobic001G449900 Sobic010G230600--Sobic001G449900 Sobic007G162100 Sobic007G162100 Sobic010G230600--Sobic007G162100 Sobic010G020400 Sobic010G020400 Sobic010G230600--Sobic010G020400 Sobic006G039400 Sobic006G039400 Sobic010G230600--Sobic006G039400 Sobic004G092500 Sobic004G092500 Sobic010G230600--Sobic004G092500 Sobic001G156900 Sobic001G156900 Sobic010G230600--Sobic001G156900 Sobic007G125000 Sobic007G125000 Sobic010G230600--Sobic007G125000 Sobic008G085700 Sobic008G085700 Sobic010G230600--Sobic008G085700 Sobic004G167200--Sobic001G537500 Sobic004G167200--Sobic001G090100 Sobic006G196300 Sobic006G196300 Sobic004G167200--Sobic006G196300 Sobic006G073200 Sobic006G073200 Sobic004G167200--Sobic006G073200 Sobic001G333100 Sobic001G333100 Sobic004G167200--Sobic001G333100 Sobic001G455800 Sobic001G455800 Sobic004G167200--Sobic001G455800 Sobic003G194100 Sobic003G194100 Sobic004G167200--Sobic003G194100 Sobic006G093300 Sobic006G093300 Sobic004G167200--Sobic006G093300 Sobic003G264100 Sobic003G264100 Sobic004G167200--Sobic003G264100 Sobic010G000800 Sobic010G000800 Sobic001G090100--Sobic010G000800 Sobic006G077200 Sobic006G077200 Sobic001G090100--Sobic006G077200 Sobic003G314700 Sobic003G314700 Sobic001G090100--Sobic003G314700 Sobic005G115500 Sobic005G115500 Sobic001G090100--Sobic005G115500 Sobic003G405500 Sobic003G405500 Sobic001G090100--Sobic003G405500 Sobic001G248100 Sobic001G248100 Sobic001G090100--Sobic001G248100 Sobic001G090100--Sobic003G379200 Sobic003G189600 Sobic003G189600 Sobic001G090100--Sobic003G189600 Sobic009G182600 Sobic009G182600 Sobic001G090100--Sobic009G182600 Sobic003G293300--Sobic001G251100 Sobic006G010000 Sobic006G010000 Sobic003G293300--Sobic006G010000 Sobic002G020700 Sobic002G020700 Sobic003G293300--Sobic002G020700 Sobic003G293300--Sobic001G333100 Sobic003G218300 Sobic003G218300 Sobic003G293300--Sobic003G218300 Sobic002G071000 Sobic002G071000 Sobic003G293300--Sobic002G071000 Sobic001G234200 Sobic001G234200 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic001G537500--Sobic006G073200 Sobic001G537500--Sobic004G167200 Sobic006G002800 Sobic006G002800 Sobic001G537500--Sobic006G002800 Sobic004G275600 Sobic004G275600 Sobic001G537500--Sobic004G275600 Sobic001G537500--Sobic004G257100 Sobic007G145400 Sobic007G145400 Sobic001G537500--Sobic007G145400 Sobic001G537500--Sobic005G115500 Sobic001G178300 Sobic001G178300 Sobic001G537500--Sobic001G178300 Sobic002G246700 Sobic002G246700 Sobic001G537500--Sobic002G246700 Sobic009G101300 Sobic009G101300 Sobic002G058700--Sobic009G101300 Sobic001G096000 Sobic001G096000 Sobic002G058700--Sobic001G096000 Sobic007G013300 Sobic007G013300 Sobic002G058700--Sobic007G013300 Sobic001G431000 Sobic001G431000 Sobic002G058700--Sobic001G431000 Sobic010G171100 Sobic010G171100 Sobic002G058700--Sobic010G171100 Sobic001G003500 Sobic001G003500 Sobic002G058700--Sobic001G003500 Sobic002G058700--Sobic002G071000 Sobic004G095300 Sobic004G095300 Sobic002G058700--Sobic004G095300 Sobic004G117800 Sobic004G117800 Sobic002G058700--Sobic004G117800
Octagon: transcription factors


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