Gene annotation
Transcriptome id Sobic.010G085600.1,Sobic.010G085600.2,Sobic.010G085600.3
Synonym Sb10g007410, CYP40, SQN
Functional annotation peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed
UniProt A0A1W0VS22 , A0A1W0VRZ9 , C5Z6V0
Pfam PF13181 PF13414 PF00160
Panther DB PTHR11071 PTHR11071:SF279
NCBI CDD KOG0546; HSP90 co-chaperone CPR7/Cyclophilin
KEGG Orthology K05864; PPID, peptidyl-prolyl isomerase D
Gene Ontology GO:0005515; protein binding GO:0006457protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT2G15790 : peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase
RAP-DB (Rice) LOC_Os06g11320.1,LOC_Os06g11320.2 : peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed
MaizeGDB (Corn) Zm00025a042527
Brachypodium KQK18991 , KQJ92979 , KQK18992 , KQK01784
Barley HORVU6Hr1G077290.17 , HORVU6Hr1G077290.16 , HORVU6Hr1G077290.14 , HORVU6Hr1G077290.13 , HORVU6Hr1G077290.12 , HORVU6Hr1G077290.11 , HORVU6Hr1G077290.9 , HORVU6Hr1G077290.7 , HORVU6Hr1G077290.4 , HORVU6Hr1G077290.3 , HORVU6Hr1G077290.2 , HORVU6Hr1G077290.1 , HORVU7Hr1G036160.3 , HORVU7Hr1G036160.2 , HORVU7Hr1G036160.1 , HORVU7Hr1G036160.7 , HORVU7Hr1G036160.6 , HORVU7Hr1G036160.5 , HORVU7Hr1G036160.4 , HORVU7Hr1G036160.9 , HORVU7Hr1G036160.8 , HORVU7Hr1G036160.10 , HORVU6Hr1G092950.1
Wheat TraesCS7B02G080700 , TraesCS7D02G176900 , TraesCS7A02G175300 , TraesCS6D02G293100 , TraesCS6A02G313700 , TraesCS6B02G343800
Populus -


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cDNA sequences
Sobic.010G085600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G295900 ribosomal protein S15 containing protein, expressed -
2 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
3 Sobic.009G174000 expressed protein -
4 Sobic.004G137500 expressed protein -
5 Sobic.003G326900 expressed protein -
6 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
7 Sobic.004G253900 BSD domain-containing protein, putative, expressed -
8 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A
9 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
10 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
11 Sobic.001G431000 Sel1 repeat domain containing protein, putative, expressed K14026: SEL1, SEL1 protein
12 Sobic.009G140400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.002G294100 DOMON domain containing protein, expressed -
14 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
15 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
16 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
17 Sobic.004G254600 RNA methyltransferase domain-containing protein 2, putative, expressed K15445: TRMT10, TRM10, tRNA (guanine9-N1)-methyltransferase
18 Sobic.001G490500 conserved oligomeric Golgi complex component 4, related, putative, expressed -
19 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
20 Sobic.004G124100 EMB1303, putative, expressed -


Gene co-expression network
sample Sobic010G085600 Sobic010G085600 Sobic002G295900 Sobic002G295900 Sobic010G085600--Sobic002G295900 Sobic009G249800 Sobic009G249800 Sobic010G085600--Sobic009G249800 Sobic009G174000 Sobic009G174000 Sobic010G085600--Sobic009G174000 Sobic004G137500 Sobic004G137500 Sobic010G085600--Sobic004G137500 Sobic003G326900 Sobic003G326900 Sobic010G085600--Sobic003G326900 Sobic001G015400 Sobic001G015400 Sobic010G085600--Sobic001G015400 Sobic004G253900 Sobic004G253900 Sobic010G085600--Sobic004G253900 Sobic004G208500 Sobic004G208500 Sobic010G085600--Sobic004G208500 Sobic007G114000 Sobic007G114000 Sobic010G085600--Sobic007G114000 Sobic002G295900--Sobic009G249800 Sobic003G388900 Sobic003G388900 Sobic002G295900--Sobic003G388900 Sobic001G304000 Sobic001G304000 Sobic002G295900--Sobic001G304000 Sobic004G212100 Sobic004G212100 Sobic002G295900--Sobic004G212100 Sobic002G367800 Sobic002G367800 Sobic002G295900--Sobic002G367800 Sobic001G490500 Sobic001G490500 Sobic002G295900--Sobic001G490500 Sobic003G196200 Sobic003G196200 Sobic002G295900--Sobic003G196200 Sobic006G029000 Sobic006G029000 Sobic002G295900--Sobic006G029000 Sobic001G161700 Sobic001G161700 Sobic002G295900--Sobic001G161700 Sobic002G408900 Sobic002G408900 Sobic009G249800--Sobic002G408900 Sobic009G249800--Sobic004G208500 Sobic001G251600 Sobic001G251600 Sobic009G249800--Sobic001G251600 Sobic002G246700 Sobic002G246700 Sobic009G249800--Sobic002G246700 Sobic009G249800--Sobic002G295900 Sobic006G010400 Sobic006G010400 Sobic009G249800--Sobic006G010400 Sobic009G249800--Sobic001G015400 Sobic001G460500 Sobic001G460500 Sobic009G249800--Sobic001G460500 Sobic004G256000 Sobic004G256000 Sobic009G249800--Sobic004G256000 Sobic001G431000 Sobic001G431000 Sobic009G174000--Sobic001G431000 Sobic005G155800 Sobic005G155800 Sobic009G174000--Sobic005G155800 Sobic001G413200 Sobic001G413200 Sobic009G174000--Sobic001G413200 Sobic007G203300 Sobic007G203300 Sobic009G174000--Sobic007G203300 Sobic003G102600 Sobic003G102600 Sobic009G174000--Sobic003G102600 Sobic010G230600 Sobic010G230600 Sobic009G174000--Sobic010G230600 Sobic009G174000--Sobic004G253900 Sobic006G087400 Sobic006G087400 Sobic009G174000--Sobic006G087400 Sobic004G227300 Sobic004G227300 Sobic009G174000--Sobic004G227300 Sobic004G348600 Sobic004G348600 Sobic004G137500--Sobic004G348600 Sobic010G081700 Sobic010G081700 Sobic004G137500--Sobic010G081700 Sobic002G160700 Sobic002G160700 Sobic004G137500--Sobic002G160700 Sobic006G265600 Sobic006G265600 Sobic004G137500--Sobic006G265600 Sobic001G004200 Sobic001G004200 Sobic004G137500--Sobic001G004200 Sobic004G137500--Sobic003G388900 Sobic010G188000 Sobic010G188000 Sobic004G137500--Sobic010G188000 Sobic004G137500--Sobic001G015400 Sobic010G161525 Sobic010G161525 Sobic004G137500--Sobic010G161525 Sobic001G129400 Sobic001G129400 Sobic003G326900--Sobic001G129400 Sobic002G402500 Sobic002G402500 Sobic003G326900--Sobic002G402500 Sobic001G060300 Sobic001G060300 Sobic003G326900--Sobic001G060300 Sobic001G008800 Sobic001G008800 Sobic003G326900--Sobic001G008800 Sobic004G184000 Sobic004G184000 Sobic003G326900--Sobic004G184000 Sobic010G194200 Sobic010G194200 Sobic003G326900--Sobic010G194200 Sobic010G018000 Sobic010G018000 Sobic003G326900--Sobic010G018000 Sobic004G248900 Sobic004G248900 Sobic003G326900--Sobic004G248900 Sobic001G214900 Sobic001G214900 Sobic003G326900--Sobic001G214900 Sobic001G099900 Sobic001G099900 Sobic001G015400--Sobic001G099900 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic002G398700 Sobic002G398700 Sobic001G015400--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic001G015400--Sobic006G106300 Sobic007G132700 Sobic007G132700 Sobic004G253900--Sobic007G132700 Sobic004G253900--Sobic009G174000 Sobic003G299000 Sobic003G299000 Sobic004G253900--Sobic003G299000 Sobic002G131900 Sobic002G131900 Sobic004G253900--Sobic002G131900 Sobic002G301300 Sobic002G301300 Sobic004G253900--Sobic002G301300 Sobic003G077900 Sobic003G077900 Sobic004G253900--Sobic003G077900 Sobic009G219900 Sobic009G219900 Sobic004G253900--Sobic009G219900 Sobic007G013300 Sobic007G013300 Sobic004G253900--Sobic007G013300 Sobic010G118100 Sobic010G118100 Sobic004G253900--Sobic010G118100 Sobic001G467100 Sobic001G467100 Sobic004G208500--Sobic001G467100 Sobic004G208500--Sobic001G099900 Sobic004G208500--Sobic001G015400 Sobic004G208500--Sobic002G408900 Sobic002G150700 Sobic002G150700 Sobic004G208500--Sobic002G150700 Sobic004G208500--Sobic001G161700 Sobic010G223300 Sobic010G223300 Sobic004G208500--Sobic010G223300 Sobic005G110499 Sobic005G110499 Sobic004G208500--Sobic005G110499 Sobic005G163700 Sobic005G163700 Sobic004G208500--Sobic005G163700 Sobic005G100900 Sobic005G100900 Sobic007G114000--Sobic005G100900 Sobic006G035500 Sobic006G035500 Sobic007G114000--Sobic006G035500 Sobic007G114000--Sobic010G188000 Sobic002G152900 Sobic002G152900 Sobic007G114000--Sobic002G152900 Sobic009G071700 Sobic009G071700 Sobic007G114000--Sobic009G071700 Sobic007G114000--Sobic010G161525 Sobic006G157000 Sobic006G157000 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic001G368100 Sobic001G368100 Sobic007G114000--Sobic001G368100
Octagon: transcription factors


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