Gene annotation
Transcriptome id Sobic.009G140400.1,Sobic.009G140400.3,Sobic.009G140400.4,Sobic.009G140400.5
Synonym Sb09g020580
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1B6P925
Pfam PF13812 PF14432 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF111
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14050 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os11g43934.2 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a043722
Brachypodium KQK06216 , PNT71241 , PNT71242 , PNT71243
Barley HORVU1Hr1G064420.7 , HORVU1Hr1G064420.6 , HORVU1Hr1G064420.4 , HORVU1Hr1G064420.9 , HORVU1Hr1G064420.8
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G032100 expressed protein -
3 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
4 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
5 Sobic.002G111800 aspartokinase, chloroplast precursor, putative, expressed K00928: aspartate kinase
6 Sobic.002G305100 mTERF domain containing protein, expressed -
7 Sobic.009G005400 ABC transporter, ATP-binding protein, putative, expressed -
8 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
9 Sobic.010G216300 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
10 Sobic.001G304000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
11 Sobic.004G124100 EMB1303, putative, expressed -
12 Sobic.001G190400 endonuclease/Exonuclease/phosphatase family protein, expressed -
13 Sobic.003G399100 pentatricopeptide, putative, expressed -
14 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
15 Sobic.001G466500 PPR repeat containing protein, expressed -
16 Sobic.010G085600 peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed K05864: PPID, peptidyl-prolyl isomerase D
17 Sobic.003G326900 expressed protein -
18 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
19 Sobic.004G002200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
20 Sobic.008G051100 RNA polymerase II subunit A C-terminal domain phosphatase ssu72, putative, expressed K15544: RNA polymerase II subunit A C-terminal domain phosphatase SSU72


Gene co-expression network
sample Sobic009G140400 Sobic009G140400 Sobic001G322600 Sobic001G322600 Sobic009G140400--Sobic001G322600 Sobic004G032100 Sobic004G032100 Sobic009G140400--Sobic004G032100 Sobic006G157000 Sobic006G157000 Sobic009G140400--Sobic006G157000 Sobic006G010400 Sobic006G010400 Sobic009G140400--Sobic006G010400 Sobic002G111800 Sobic002G111800 Sobic009G140400--Sobic002G111800 Sobic002G305100 Sobic002G305100 Sobic009G140400--Sobic002G305100 Sobic009G005400 Sobic009G005400 Sobic009G140400--Sobic009G005400 Sobic001G434200 Sobic001G434200 Sobic009G140400--Sobic001G434200 Sobic010G216300 Sobic010G216300 Sobic009G140400--Sobic010G216300 Sobic010G083900 Sobic010G083900 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic010G224700 Sobic010G224700 Sobic001G322600--Sobic010G224700 Sobic003G407600 Sobic003G407600 Sobic001G322600--Sobic003G407600 Sobic005G028300 Sobic005G028300 Sobic001G322600--Sobic005G028300 Sobic002G378100 Sobic002G378100 Sobic001G322600--Sobic002G378100 Sobic004G032100--Sobic009G005400 Sobic004G032100--Sobic002G305100 Sobic009G124000 Sobic009G124000 Sobic004G032100--Sobic009G124000 Sobic009G045900 Sobic009G045900 Sobic004G032100--Sobic009G045900 Sobic006G208400 Sobic006G208400 Sobic004G032100--Sobic006G208400 Sobic008G157200 Sobic008G157200 Sobic004G032100--Sobic008G157200 Sobic006G275000 Sobic006G275000 Sobic004G032100--Sobic006G275000 Sobic010G059200 Sobic010G059200 Sobic004G032100--Sobic010G059200 Sobic010G134500 Sobic010G134500 Sobic004G032100--Sobic010G134500 Sobic003G309300 Sobic003G309300 Sobic006G157000--Sobic003G309300 Sobic009G071700 Sobic009G071700 Sobic006G157000--Sobic009G071700 Sobic009G072000 Sobic009G072000 Sobic006G157000--Sobic009G072000 Sobic006G157000--Sobic010G216300 Sobic001G468600 Sobic001G468600 Sobic006G157000--Sobic001G468600 Sobic008G017200 Sobic008G017200 Sobic006G157000--Sobic008G017200 Sobic006G157000--Sobic006G010400 Sobic004G124100 Sobic004G124100 Sobic006G157000--Sobic004G124100 Sobic007G114000 Sobic007G114000 Sobic006G157000--Sobic007G114000 Sobic001G251600 Sobic001G251600 Sobic006G010400--Sobic001G251600 Sobic006G084000 Sobic006G084000 Sobic006G010400--Sobic006G084000 Sobic007G071900 Sobic007G071900 Sobic006G010400--Sobic007G071900 Sobic001G537500 Sobic001G537500 Sobic006G010400--Sobic001G537500 Sobic009G249800 Sobic009G249800 Sobic006G010400--Sobic009G249800 Sobic007G140400 Sobic007G140400 Sobic006G010400--Sobic007G140400 Sobic008G051200 Sobic008G051200 Sobic006G010400--Sobic008G051200 Sobic004G257100 Sobic004G257100 Sobic006G010400--Sobic004G257100 Sobic001G460500 Sobic001G460500 Sobic006G010400--Sobic001G460500 Sobic002G235600 Sobic002G235600 Sobic002G111800--Sobic002G235600 Sobic003G399100 Sobic003G399100 Sobic002G111800--Sobic003G399100 Sobic001G027100 Sobic001G027100 Sobic002G111800--Sobic001G027100 Sobic009G251000 Sobic009G251000 Sobic002G111800--Sobic009G251000 Sobic008G038600 Sobic008G038600 Sobic002G111800--Sobic008G038600 Sobic001G025800 Sobic001G025800 Sobic002G111800--Sobic001G025800 Sobic007G026200 Sobic007G026200 Sobic002G111800--Sobic007G026200 Sobic003G182100 Sobic003G182100 Sobic002G111800--Sobic003G182100 Sobic002G189600 Sobic002G189600 Sobic002G111800--Sobic002G189600 Sobic002G305100--Sobic008G038600 Sobic002G305100--Sobic003G399100 Sobic001G448600 Sobic001G448600 Sobic002G305100--Sobic001G448600 Sobic002G305100--Sobic009G005400 Sobic002G305100--Sobic001G025800 Sobic004G003900 Sobic004G003900 Sobic002G305100--Sobic004G003900 Sobic001G375000 Sobic001G375000 Sobic002G305100--Sobic001G375000 Sobic002G305100--Sobic004G032100 Sobic007G015300 Sobic007G015300 Sobic002G305100--Sobic007G015300 Sobic009G005400--Sobic001G025800 Sobic010G100800 Sobic010G100800 Sobic009G005400--Sobic010G100800 Sobic003G267500 Sobic003G267500 Sobic009G005400--Sobic003G267500 Sobic010G204900 Sobic010G204900 Sobic009G005400--Sobic010G204900 Sobic004G144400 Sobic004G144400 Sobic009G005400--Sobic004G144400 Sobic009G005400--Sobic008G038600 Sobic009G105200 Sobic009G105200 Sobic009G005400--Sobic009G105200 Sobic009G005400--Sobic006G275000 Sobic009G005400--Sobic008G157200 Sobic001G434200--Sobic007G071900 Sobic006G093300 Sobic006G093300 Sobic001G434200--Sobic006G093300 Sobic006G039400 Sobic006G039400 Sobic001G434200--Sobic006G039400 Sobic001G434200--Sobic001G468600 Sobic001G333100 Sobic001G333100 Sobic001G434200--Sobic001G333100 Sobic004G171200 Sobic004G171200 Sobic001G434200--Sobic004G171200 Sobic008G087900 Sobic008G087900 Sobic001G434200--Sobic008G087900 Sobic004G121300 Sobic004G121300 Sobic001G434200--Sobic004G121300 Sobic001G014800 Sobic001G014800 Sobic001G434200--Sobic001G014800 Sobic010G216300--Sobic006G157000 Sobic010G216300--Sobic003G407600 Sobic010G216300--Sobic006G010400 Sobic001G007800 Sobic001G007800 Sobic010G216300--Sobic001G007800 Sobic010G216300--Sobic006G084000 Sobic008G160000 Sobic008G160000 Sobic010G216300--Sobic008G160000 Sobic010G216300--Sobic003G309300 Sobic010G216300--Sobic009G071700 Sobic007G143500 Sobic007G143500 Sobic010G216300--Sobic007G143500
Octagon: transcription factors


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