Gene annotation
Transcriptome id Sobic.004G002200.1,Sobic.004G002200.2
Synonym CPN60B, LEN1, Sb04g000370
Functional annotation T-complex protein, putative, expressed
UniProt A0A194YN38
Pfam PF00118
Panther DB PTHR11353 PTHR11353:SF102
NCBI CDD -
KEGG Orthology K04077; groEL, chaperonin GroEL
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT3G13470 : TCP-1/cpn60 chaperonin family protein
RAP-DB (Rice) LOC_Os02g01280.1 : T-complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a035093 , Zm00025a041190
Brachypodium KQJ92757 , KQJ92756
Barley HORVU6Hr1G000180.15 , HORVU6Hr1G000180.14 , HORVU6Hr1G000180.16 , HORVU6Hr1G000180.11 , HORVU6Hr1G000180.10 , HORVU6Hr1G000180.13 , HORVU6Hr1G000180.12 , HORVU4Hr1G076680.1 , HORVU4Hr1G076680.3 , HORVU4Hr1G076680.2 , HORVU6Hr1G000180.4 , HORVU6Hr1G000180.6 , HORVU6Hr1G005220.7 , HORVU6Hr1G005220.6 , HORVU6Hr1G005220.5 , HORVU6Hr1G005220.4 , HORVU6Hr1G005220.3 , HORVU6Hr1G005220.2 , HORVU6Hr1G005220.1 , HORVU5Hr1G074160.1 , HORVU2Hr1G107410.1 , HORVU2Hr1G107410.2 , HORVU1Hr1G049770.2 , HORVU1Hr1G049770.1 , HORVU6Hr1G000180.9 , HORVU6Hr1G000180.8 , HORVU6Hr1G000180.1 , HORVU6Hr1G000180.3 , HORVU6Hr1G000180.2 , HORVU6Hr1G000180.5 , HORVU6Hr1G000180.7 , HORVU4Hr1G066820.2 , HORVU5Hr1G023830.1
Wheat TraesCS6B02G039300 , TraesCS6B02G039300 , TraesCS6D02G031400 , TraesCS6B02G012100 , TraesCS6B02G012100 , TraesCS6B02G012100 , TraesCS6A02G028100 , TraesCS6D02G009100 , TraesCS6A02G006400 , TraesCS6B02G012000 , TraesCS6B02G011800
Populus -


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cDNA sequences
Sobic.004G002200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
2 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
3 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
4 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
5 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
7 Sobic.006G281500 prenylcysteine oxidase 1 precursor, putative, expressed K05906: PCYOX1, prenylcysteine oxidase / farnesylcysteine lyase
8 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
9 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
10 Sobic.008G124800 expressed protein -
11 Sobic.003G314700 expressed protein -
12 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
13 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
14 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
15 Sobic.009G105900 amino acid permease family protein, putative, expressed K14427: SLC12A4_6, solute carrier family 12 (potassium/chloride transporter), member 4/6
16 Sobic.007G188600 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
17 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
18 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
19 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
20 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta


Gene co-expression network
sample Sobic004G002200 Sobic004G002200 Sobic002G423500 Sobic002G423500 Sobic004G002200--Sobic002G423500 Sobic001G251600 Sobic001G251600 Sobic004G002200--Sobic001G251600 Sobic009G249800 Sobic009G249800 Sobic004G002200--Sobic009G249800 Sobic003G029600 Sobic003G029600 Sobic004G002200--Sobic003G029600 Sobic001G322600 Sobic001G322600 Sobic004G002200--Sobic001G322600 Sobic001G117800 Sobic001G117800 Sobic004G002200--Sobic001G117800 Sobic006G281500 Sobic006G281500 Sobic004G002200--Sobic006G281500 Sobic009G045900 Sobic009G045900 Sobic004G002200--Sobic009G045900 Sobic010G083900 Sobic010G083900 Sobic004G002200--Sobic010G083900 Sobic005G163700 Sobic005G163700 Sobic002G423500--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic002G423500--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic002G423500--Sobic002G014400 Sobic001G460500 Sobic001G460500 Sobic002G423500--Sobic001G460500 Sobic004G326600 Sobic004G326600 Sobic002G423500--Sobic004G326600 Sobic004G215700 Sobic004G215700 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic006G010400 Sobic006G010400 Sobic001G251600--Sobic006G010400 Sobic001G251600--Sobic002G423500 SobicK004100 SobicK004100 Sobic001G251600--SobicK004100 Sobic004G208500 Sobic004G208500 Sobic001G251600--Sobic004G208500 Sobic001G145400 Sobic001G145400 Sobic001G251600--Sobic001G145400 Sobic001G251600--Sobic009G249800 Sobic002G408900 Sobic002G408900 Sobic001G251600--Sobic002G408900 Sobic002G394600 Sobic002G394600 Sobic001G251600--Sobic002G394600 Sobic002G412700 Sobic002G412700 Sobic001G251600--Sobic002G412700 Sobic009G249800--Sobic002G408900 Sobic009G249800--Sobic004G208500 Sobic009G249800--Sobic001G251600 Sobic002G246700 Sobic002G246700 Sobic009G249800--Sobic002G246700 Sobic002G295900 Sobic002G295900 Sobic009G249800--Sobic002G295900 Sobic009G249800--Sobic006G010400 Sobic001G015400 Sobic001G015400 Sobic009G249800--Sobic001G015400 Sobic009G249800--Sobic001G460500 Sobic004G256000 Sobic004G256000 Sobic009G249800--Sobic004G256000 Sobic003G029600--Sobic001G117800 Sobic003G314700 Sobic003G314700 Sobic003G029600--Sobic003G314700 Sobic002G070600 Sobic002G070600 Sobic003G029600--Sobic002G070600 Sobic002G340900 Sobic002G340900 Sobic003G029600--Sobic002G340900 Sobic001G301200 Sobic001G301200 Sobic003G029600--Sobic001G301200 Sobic001G449900 Sobic001G449900 Sobic003G029600--Sobic001G449900 Sobic008G124800 Sobic008G124800 Sobic003G029600--Sobic008G124800 Sobic009G118900 Sobic009G118900 Sobic003G029600--Sobic009G118900 Sobic001G437400 Sobic001G437400 Sobic003G029600--Sobic001G437400 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic010G224700 Sobic010G224700 Sobic001G322600--Sobic010G224700 Sobic003G407600 Sobic003G407600 Sobic001G322600--Sobic003G407600 Sobic005G028300 Sobic005G028300 Sobic001G322600--Sobic005G028300 Sobic002G378100 Sobic002G378100 Sobic001G322600--Sobic002G378100 Sobic001G117800--Sobic003G029600 Sobic001G117800--Sobic002G070600 Sobic001G117800--Sobic009G118900 Sobic001G117800--Sobic002G340900 Sobic001G474400 Sobic001G474400 Sobic001G117800--Sobic001G474400 Sobic008G072200 Sobic008G072200 Sobic001G117800--Sobic008G072200 Sobic001G117800--Sobic003G314700 Sobic009G120500 Sobic009G120500 Sobic001G117800--Sobic009G120500 Sobic001G117800--Sobic001G437400 Sobic001G263000 Sobic001G263000 Sobic006G281500--Sobic001G263000 Sobic009G227900 Sobic009G227900 Sobic006G281500--Sobic009G227900 Sobic009G081500 Sobic009G081500 Sobic006G281500--Sobic009G081500 Sobic002G317300 Sobic002G317300 Sobic006G281500--Sobic002G317300 Sobic005G105500 Sobic005G105500 Sobic006G281500--Sobic005G105500 Sobic002G259400 Sobic002G259400 Sobic006G281500--Sobic002G259400 Sobic007G188600 Sobic007G188600 Sobic006G281500--Sobic007G188600 Sobic003G119400 Sobic003G119400 Sobic006G281500--Sobic003G119400 Sobic010G085200 Sobic010G085200 Sobic006G281500--Sobic010G085200 Sobic008G135200 Sobic008G135200 Sobic009G045900--Sobic008G135200 Sobic002G047000 Sobic002G047000 Sobic009G045900--Sobic002G047000 Sobic009G045900--Sobic002G246700 Sobic009G045900--Sobic002G408900 Sobic001G090100 Sobic001G090100 Sobic009G045900--Sobic001G090100 Sobic009G045900--Sobic003G314700 Sobic010G206300 Sobic010G206300 Sobic009G045900--Sobic010G206300 Sobic001G248100 Sobic001G248100 Sobic009G045900--Sobic001G248100 Sobic001G537500 Sobic001G537500 Sobic009G045900--Sobic001G537500 Sobic010G083900--Sobic002G378100 Sobic010G083900--Sobic001G322600 Sobic001G049800 Sobic001G049800 Sobic010G083900--Sobic001G049800 Sobic001G422500 Sobic001G422500 Sobic010G083900--Sobic001G422500 Sobic010G083900--Sobic010G224700 Sobic004G151000 Sobic004G151000 Sobic010G083900--Sobic004G151000 Sobic010G083900--Sobic003G014700 Sobic010G083900--Sobic005G028300 Sobic001G119600 Sobic001G119600 Sobic010G083900--Sobic001G119600
Octagon: transcription factors


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