Gene annotation
Transcriptome id Sobic.006G152000.1
Synonym RER1, Sb06g022970
Functional annotation expressed protein
UniProt C5YCG1 , C6JSN0
Pfam PF11891
Panther DB PTHR31038 PTHR31038:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G22790 : reticulata-related 1
RAP-DB (Rice) LOC_Os04g44290.1 : expressed protein
MaizeGDB (Corn) Zm00025a010622
Brachypodium KQK20289 , KQJ83666 , KQJ83665
Barley HORVU2Hr1G090260.15 , HORVU2Hr1G090260.14 , HORVU2Hr1G090260.16 , HORVU2Hr1G090260.10 , HORVU2Hr1G090260.13 , HORVU2Hr1G090260.12 , HORVU2Hr1G090260.1 , HORVU2Hr1G090260.3 , HORVU2Hr1G090260.2 , HORVU2Hr1G090260.5 , HORVU2Hr1G090260.4 , HORVU2Hr1G090260.7 , HORVU2Hr1G090260.6 , HORVU2Hr1G090260.9 , HORVU2Hr1G090260.8
Wheat TraesCS2D02G374200 , TraesCS2B02G394800 , TraesCS2A02G377800
Populus PNS98907 , PNS98906


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cDNA sequences
Sobic.006G152000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G254600 RNA methyltransferase domain-containing protein 2, putative, expressed K15445: TRMT10, TRM10, tRNA (guanine9-N1)-methyltransferase
2 Sobic.010G103200 ThiF family domain containing protein, putative, expressed -
3 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
4 Sobic.006G035500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
5 Sobic.009G250900 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
6 Sobic.001G486700 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
7 Sobic.008G118600 riboflavin synthase alpha chain, putative, expressed K00793: ribE, riboflavin synthase
8 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
9 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
10 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
11 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
12 Sobic.008G004300 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
13 Sobic.004G268100 ornithine carbamoyltransferase, putative, expressed K00611: OTC, argF, ornithine carbamoyltransferase
14 Sobic.003G309300 radical SAM enzyme, putative, expressed K03644: lipA, LIAS, LIP1, lipoyl synthase
15 Sobic.010G142700 - -
16 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
17 Sobic.008G017200 WD domain, G-beta repeat domain containing protein, expressed K14320: aladin
18 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
19 Sobic.003G392600 expressed protein -
20 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase


Gene co-expression network
sample Sobic006G152000 Sobic006G152000 Sobic004G254600 Sobic004G254600 Sobic006G152000--Sobic004G254600 Sobic010G103200 Sobic010G103200 Sobic006G152000--Sobic010G103200 Sobic007G114000 Sobic007G114000 Sobic006G152000--Sobic007G114000 Sobic006G035500 Sobic006G035500 Sobic006G152000--Sobic006G035500 Sobic009G250900 Sobic009G250900 Sobic006G152000--Sobic009G250900 Sobic001G486700 Sobic001G486700 Sobic006G152000--Sobic001G486700 Sobic008G118600 Sobic008G118600 Sobic006G152000--Sobic008G118600 Sobic001G537500 Sobic001G537500 Sobic006G152000--Sobic001G537500 Sobic002G246700 Sobic002G246700 Sobic006G152000--Sobic002G246700 Sobic004G254600--Sobic006G152000 Sobic004G254600--Sobic009G250900 Sobic004G254600--Sobic007G114000 Sobic002G238000 Sobic002G238000 Sobic004G254600--Sobic002G238000 Sobic008G169200 Sobic008G169200 Sobic004G254600--Sobic008G169200 Sobic001G008800 Sobic001G008800 Sobic004G254600--Sobic001G008800 Sobic009G045900 Sobic009G045900 Sobic004G254600--Sobic009G045900 Sobic001G099800 Sobic001G099800 Sobic004G254600--Sobic001G099800 Sobic004G256000 Sobic004G256000 Sobic004G254600--Sobic004G256000 Sobic002G365900 Sobic002G365900 Sobic010G103200--Sobic002G365900 Sobic006G157000 Sobic006G157000 Sobic010G103200--Sobic006G157000 Sobic010G103200--Sobic006G035500 Sobic010G103200--Sobic001G486700 Sobic008G017200 Sobic008G017200 Sobic010G103200--Sobic008G017200 Sobic010G103200--Sobic009G045900 Sobic009G071700 Sobic009G071700 Sobic010G103200--Sobic009G071700 Sobic010G103200--Sobic004G256000 Sobic004G268100 Sobic004G268100 Sobic010G103200--Sobic004G268100 Sobic005G100900 Sobic005G100900 Sobic007G114000--Sobic005G100900 Sobic007G114000--Sobic006G035500 Sobic010G188000 Sobic010G188000 Sobic007G114000--Sobic010G188000 Sobic002G152900 Sobic002G152900 Sobic007G114000--Sobic002G152900 Sobic007G114000--Sobic009G071700 Sobic010G161525 Sobic010G161525 Sobic007G114000--Sobic010G161525 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic001G368100 Sobic001G368100 Sobic007G114000--Sobic001G368100 Sobic006G035500--Sobic002G412700 Sobic006G035500--Sobic007G114000 Sobic006G035500--Sobic010G188000 Sobic003G167900 Sobic003G167900 Sobic006G035500--Sobic003G167900 Sobic004G034700 Sobic004G034700 Sobic006G035500--Sobic004G034700 Sobic006G073200 Sobic006G073200 Sobic006G035500--Sobic006G073200 Sobic004G275600 Sobic004G275600 Sobic006G035500--Sobic004G275600 Sobic007G106700 Sobic007G106700 Sobic006G035500--Sobic007G106700 Sobic007G071900 Sobic007G071900 Sobic006G035500--Sobic007G071900 Sobic003G037000 Sobic003G037000 Sobic009G250900--Sobic003G037000 Sobic001G251100 Sobic001G251100 Sobic009G250900--Sobic001G251100 Sobic009G250900--Sobic004G254600 Sobic010G230600 Sobic010G230600 Sobic009G250900--Sobic010G230600 Sobic004G167200 Sobic004G167200 Sobic009G250900--Sobic004G167200 Sobic001G090100 Sobic001G090100 Sobic009G250900--Sobic001G090100 Sobic003G293300 Sobic003G293300 Sobic009G250900--Sobic003G293300 Sobic009G250900--Sobic001G537500 Sobic002G058700 Sobic002G058700 Sobic009G250900--Sobic002G058700 Sobic009G124000 Sobic009G124000 Sobic001G486700--Sobic009G124000 Sobic001G462200 Sobic001G462200 Sobic001G486700--Sobic001G462200 Sobic004G018000 Sobic004G018000 Sobic001G486700--Sobic004G018000 Sobic003G378400 Sobic003G378400 Sobic001G486700--Sobic003G378400 Sobic002G301200 Sobic002G301200 Sobic001G486700--Sobic002G301200 Sobic001G486700--Sobic004G275600 Sobic001G468600 Sobic001G468600 Sobic001G486700--Sobic001G468600 Sobic009G072000 Sobic009G072000 Sobic001G486700--Sobic009G072000 Sobic001G486700--Sobic009G045900 Sobic004G124100 Sobic004G124100 Sobic008G118600--Sobic004G124100 Sobic008G118600--Sobic009G124000 Sobic004G028000 Sobic004G028000 Sobic008G118600--Sobic004G028000 Sobic004G248900 Sobic004G248900 Sobic008G118600--Sobic004G248900 Sobic003G216500 Sobic003G216500 Sobic008G118600--Sobic003G216500 Sobic005G055000 Sobic005G055000 Sobic008G118600--Sobic005G055000 Sobic001G376700 Sobic001G376700 Sobic008G118600--Sobic001G376700 Sobic004G182500 Sobic004G182500 Sobic008G118600--Sobic004G182500 Sobic006G020900 Sobic006G020900 Sobic008G118600--Sobic006G020900 Sobic001G537500--Sobic006G073200 Sobic001G537500--Sobic004G167200 Sobic006G002800 Sobic006G002800 Sobic001G537500--Sobic006G002800 Sobic001G537500--Sobic004G275600 Sobic004G257100 Sobic004G257100 Sobic001G537500--Sobic004G257100 Sobic007G145400 Sobic007G145400 Sobic001G537500--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G537500--Sobic005G115500 Sobic001G178300 Sobic001G178300 Sobic001G537500--Sobic001G178300 Sobic001G537500--Sobic002G246700 Sobic001G455800 Sobic001G455800 Sobic002G246700--Sobic001G455800 Sobic002G408900 Sobic002G408900 Sobic002G246700--Sobic002G408900 Sobic002G246700--Sobic009G045900 Sobic009G249800 Sobic009G249800 Sobic002G246700--Sobic009G249800 Sobic004G208500 Sobic004G208500 Sobic002G246700--Sobic004G208500 Sobic002G246700--Sobic001G537500 Sobic002G246700--Sobic007G071900 Sobic008G085700 Sobic008G085700 Sobic002G246700--Sobic008G085700 Sobic001G117800 Sobic001G117800 Sobic002G246700--Sobic001G117800
Octagon: transcription factors


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