Gene annotation
Transcriptome id Sobic.004G117800.1
Synonym VPS29, Sb04g009820, MAG1, ATVPS29
Functional annotation Ser/Thr protein phosphatase family protein, putative, expressed
UniProt C5XZJ2
Pfam PF12850
Panther DB PTHR11124
NCBI CDD KOG3325; Membrane coat complex Retromer, subunit VPS29/PEP11
KEGG Orthology K18467; vacuolar protein sorting-associated protein 29
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47810 : Calcineurin-like metallo-phosphoesterase superfamily protein
RAP-DB (Rice) LOC_Os02g16550.1 : Ser/Thr protein phosphatase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a019872 , Zm00025a034394
Brachypodium KQJ94314
Barley HORVU6Hr1G048780.2
Wheat TraesCS6A02G195000 , TraesCS6D02G181400 , TraesCS6B02G221800
Populus PNT58462


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G170200 amino acid kinase, putative, expressed K00930: acetylglutamate kinase
2 Sobic.008G051100 RNA polymerase II subunit A C-terminal domain phosphatase ssu72, putative, expressed K15544: RNA polymerase II subunit A C-terminal domain phosphatase SSU72
3 Sobic.009G029700 aminotransferase, putative, expressed K00818: E2.6.1.11, acetylornithine aminotransferase
4 Sobic.001G280400 ankyrin repeat domain-containing protein 28, putative, expressed -
5 Sobic.004G136500 - -
6 Sobic.001G008800 expressed protein -
7 Sobic.001G132900 expressed protein -
8 Sobic.002G058700 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
9 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
10 Sobic.005G164500 expressed protein -
11 Sobic.001G218800 expressed protein -
12 Sobic.001G202500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
13 Sobic.004G268100 ornithine carbamoyltransferase, putative, expressed K00611: OTC, argF, ornithine carbamoyltransferase
14 Sobic.007G029100 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -
15 Sobic.006G087400 expressed protein -
16 Sobic.001G012100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -
17 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
18 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
19 Sobic.009G057700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
20 Sobic.001G099800 nucleic acid binding protein, putative, expressed -


Gene co-expression network
sample Sobic004G117800 Sobic004G117800 Sobic006G170200 Sobic006G170200 Sobic004G117800--Sobic006G170200 Sobic008G051100 Sobic008G051100 Sobic004G117800--Sobic008G051100 Sobic009G029700 Sobic009G029700 Sobic004G117800--Sobic009G029700 Sobic001G280400 Sobic001G280400 Sobic004G117800--Sobic001G280400 Sobic004G136500 Sobic004G136500 Sobic004G117800--Sobic004G136500 Sobic001G008800 Sobic001G008800 Sobic004G117800--Sobic001G008800 Sobic001G132900 Sobic001G132900 Sobic004G117800--Sobic001G132900 Sobic002G058700 Sobic002G058700 Sobic004G117800--Sobic002G058700 Sobic003G058900 Sobic003G058900 Sobic004G117800--Sobic003G058900 Sobic001G416300 Sobic001G416300 Sobic006G170200--Sobic001G416300 Sobic006G170200--Sobic004G117800 Sobic004G268100 Sobic004G268100 Sobic006G170200--Sobic004G268100 Sobic003G402200 Sobic003G402200 Sobic006G170200--Sobic003G402200 Sobic006G170200--Sobic009G029700 Sobic001G202500 Sobic001G202500 Sobic006G170200--Sobic001G202500 Sobic002G281800 Sobic002G281800 Sobic006G170200--Sobic002G281800 Sobic009G000900 Sobic009G000900 Sobic006G170200--Sobic009G000900 Sobic009G152400 Sobic009G152400 Sobic006G170200--Sobic009G152400 Sobic008G051100--Sobic004G117800 Sobic008G103800 Sobic008G103800 Sobic008G051100--Sobic008G103800 Sobic008G051100--Sobic001G280400 Sobic004G184000 Sobic004G184000 Sobic008G051100--Sobic004G184000 Sobic004G206300 Sobic004G206300 Sobic008G051100--Sobic004G206300 Sobic003G167900 Sobic003G167900 Sobic008G051100--Sobic003G167900 Sobic006G020900 Sobic006G020900 Sobic008G051100--Sobic006G020900 Sobic001G099800 Sobic001G099800 Sobic008G051100--Sobic001G099800 Sobic001G408800 Sobic001G408800 Sobic008G051100--Sobic001G408800 Sobic001G380500 Sobic001G380500 Sobic009G029700--Sobic001G380500 Sobic009G029700--Sobic004G268100 Sobic007G029100 Sobic007G029100 Sobic009G029700--Sobic007G029100 Sobic009G029700--Sobic004G117800 Sobic001G437200 Sobic001G437200 Sobic009G029700--Sobic001G437200 Sobic002G039000 Sobic002G039000 Sobic009G029700--Sobic002G039000 Sobic003G310100 Sobic003G310100 Sobic009G029700--Sobic003G310100 Sobic009G029700--Sobic002G281800 Sobic009G029700--Sobic001G202500 Sobic005G164500 Sobic005G164500 Sobic001G280400--Sobic005G164500 Sobic001G280400--Sobic004G117800 Sobic001G280400--Sobic008G051100 Sobic005G100900 Sobic005G100900 Sobic001G280400--Sobic005G100900 Sobic001G280400--Sobic001G099800 Sobic003G209400 Sobic003G209400 Sobic001G280400--Sobic003G209400 Sobic004G027000 Sobic004G027000 Sobic001G280400--Sobic004G027000 Sobic001G280400--Sobic004G136500 Sobic001G280400--Sobic001G132900 Sobic004G136500--Sobic001G008800 Sobic004G074300 Sobic004G074300 Sobic004G136500--Sobic004G074300 Sobic004G136500--Sobic004G117800 Sobic001G119900 Sobic001G119900 Sobic004G136500--Sobic001G119900 Sobic002G209400 Sobic002G209400 Sobic004G136500--Sobic002G209400 Sobic006G272200 Sobic006G272200 Sobic004G136500--Sobic006G272200 Sobic010G085200 Sobic010G085200 Sobic004G136500--Sobic010G085200 Sobic004G136500--Sobic001G132900 Sobic004G136500--Sobic001G280400 Sobic001G129400 Sobic001G129400 Sobic001G008800--Sobic001G129400 Sobic003G326900 Sobic003G326900 Sobic001G008800--Sobic003G326900 Sobic001G008800--Sobic001G132900 Sobic003G003000 Sobic003G003000 Sobic001G008800--Sobic003G003000 Sobic001G008800--Sobic004G136500 Sobic001G008800--Sobic004G117800 Sobic001G144600 Sobic001G144600 Sobic001G008800--Sobic001G144600 Sobic006G087400 Sobic006G087400 Sobic001G008800--Sobic006G087400 Sobic001G451901 Sobic001G451901 Sobic001G008800--Sobic001G451901 Sobic001G132900--Sobic003G003000 Sobic001G132900--Sobic001G008800 Sobic009G209100 Sobic009G209100 Sobic001G132900--Sobic009G209100 Sobic001G132900--Sobic001G129400 Sobic001G404100 Sobic001G404100 Sobic001G132900--Sobic001G404100 Sobic010G018000 Sobic010G018000 Sobic001G132900--Sobic010G018000 Sobic001G136500 Sobic001G136500 Sobic001G132900--Sobic001G136500 Sobic009G130400 Sobic009G130400 Sobic001G132900--Sobic009G130400 Sobic001G132900--Sobic004G117800 Sobic009G101300 Sobic009G101300 Sobic002G058700--Sobic009G101300 Sobic001G096000 Sobic001G096000 Sobic002G058700--Sobic001G096000 Sobic007G013300 Sobic007G013300 Sobic002G058700--Sobic007G013300 Sobic001G431000 Sobic001G431000 Sobic002G058700--Sobic001G431000 Sobic010G171100 Sobic010G171100 Sobic002G058700--Sobic010G171100 Sobic001G003500 Sobic001G003500 Sobic002G058700--Sobic001G003500 Sobic002G071000 Sobic002G071000 Sobic002G058700--Sobic002G071000 Sobic004G095300 Sobic004G095300 Sobic002G058700--Sobic004G095300 Sobic002G058700--Sobic004G117800 Sobic003G058900--Sobic001G099800 Sobic003G058900--Sobic004G095300 Sobic003G058900--Sobic010G171100 Sobic007G180000 Sobic007G180000 Sobic003G058900--Sobic007G180000 Sobic008G125000 Sobic008G125000 Sobic003G058900--Sobic008G125000 Sobic003G058900--Sobic002G058700 Sobic003G058900--Sobic004G117800 Sobic003G058900--Sobic001G144600 Sobic001G335500 Sobic001G335500 Sobic003G058900--Sobic001G335500
Octagon: transcription factors


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