Gene annotation
Transcriptome id Sobic.006G254300.1
Synonym Sb06g031820
Functional annotation RCC2, putative, expressed
UniProt C5Y9Y1
Pfam PF00415
Panther DB PTHR22870 PTHR22870:SF195
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19880 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os04g56720.1 : RCC2, putative, expressed
MaizeGDB (Corn) Zm00025a057302
Brachypodium KQJ85136 , PNT62074
Barley HORVU1Hr1G015270.2 , HORVU1Hr1G015270.1
Wheat TraesCS1A02G071200 , TraesCS1A02G071100 , TraesCS1D02G073500
Populus -


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cDNA sequences
Sobic.006G254300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G493400 nucleic acid binding protein, putative, expressed -
2 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
3 Sobic.001G131600 expressed protein -
4 Sobic.001G382700 inactive receptor kinase At2g26730 precursor, putative, expressed -
5 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
6 Sobic.009G214100 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
7 Sobic.010G277300 "BRD2(Ortholog in rice:Hong et al., 2005)"(PubMedID : 31659939)@FAD-linked oxidoreductase protein, putative, expressed K09828: DHCR24, Delta24-sterol reductase
8 Sobic.008G113800 expressed protein -
9 Sobic.010G178600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
10 Sobic.004G002500 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
11 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
12 Sobic.001G144200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
13 Sobic.003G017500 TTL1, putative, expressed -
14 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
15 Sobic.001G214900 expressed protein -
16 Sobic.003G420100 RNA recognition motif containing protein, putative, expressed K13207: CUGBP, BRUNOL, CUG-BP- and ETR3-like factor
17 Sobic.010G104400 cysteine-rich repeat secretory protein precursor, putative, expressed -
18 Sobic.009G078900 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.003G445000 pectinacetylesterase domain containing protein, expressed -
20 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1


Gene co-expression network
sample Sobic006G254300 Sobic006G254300 Sobic001G493400 Sobic001G493400 Sobic006G254300--Sobic001G493400 Sobic002G313600 Sobic002G313600 Sobic006G254300--Sobic002G313600 Sobic001G131600 Sobic001G131600 Sobic006G254300--Sobic001G131600 Sobic001G382700 Sobic001G382700 Sobic006G254300--Sobic001G382700 Sobic010G134100 Sobic010G134100 Sobic006G254300--Sobic010G134100 Sobic009G214100 Sobic009G214100 Sobic006G254300--Sobic009G214100 Sobic010G277300 Sobic010G277300 Sobic006G254300--Sobic010G277300 Sobic008G113800 Sobic008G113800 Sobic006G254300--Sobic008G113800 Sobic010G178600 Sobic010G178600 Sobic006G254300--Sobic010G178600 Sobic001G493400--Sobic010G134100 Sobic004G002500 Sobic004G002500 Sobic001G493400--Sobic004G002500 Sobic001G214900 Sobic001G214900 Sobic001G493400--Sobic001G214900 Sobic001G167500 Sobic001G167500 Sobic001G493400--Sobic001G167500 Sobic004G082700 Sobic004G082700 Sobic001G493400--Sobic004G082700 Sobic007G108100 Sobic007G108100 Sobic001G493400--Sobic007G108100 Sobic001G493400--Sobic006G254300 Sobic001G228200 Sobic001G228200 Sobic001G493400--Sobic001G228200 Sobic001G371100 Sobic001G371100 Sobic001G493400--Sobic001G371100 Sobic001G116000 Sobic001G116000 Sobic002G313600--Sobic001G116000 Sobic007G044400 Sobic007G044400 Sobic002G313600--Sobic007G044400 Sobic001G196100 Sobic001G196100 Sobic002G313600--Sobic001G196100 Sobic003G134800 Sobic003G134800 Sobic002G313600--Sobic003G134800 Sobic001G026600 Sobic001G026600 Sobic002G313600--Sobic001G026600 Sobic001G108400 Sobic001G108400 Sobic002G313600--Sobic001G108400 Sobic001G530800 Sobic001G530800 Sobic002G313600--Sobic001G530800 Sobic001G281900 Sobic001G281900 Sobic002G313600--Sobic001G281900 Sobic003G017500 Sobic003G017500 Sobic002G313600--Sobic003G017500 Sobic009G189200 Sobic009G189200 Sobic001G131600--Sobic009G189200 Sobic002G350400 Sobic002G350400 Sobic001G131600--Sobic002G350400 Sobic003G122200 Sobic003G122200 Sobic001G131600--Sobic003G122200 Sobic006G102900 Sobic006G102900 Sobic001G131600--Sobic006G102900 Sobic005G047100 Sobic005G047100 Sobic001G131600--Sobic005G047100 Sobic004G285900 Sobic004G285900 Sobic001G131600--Sobic004G285900 Sobic003G135400 Sobic003G135400 Sobic001G131600--Sobic003G135400 Sobic002G111500 Sobic002G111500 Sobic001G131600--Sobic002G111500 Sobic003G364900 Sobic003G364900 Sobic001G131600--Sobic003G364900 Sobic002G016400 Sobic002G016400 Sobic001G382700--Sobic002G016400 Sobic010G216600 Sobic010G216600 Sobic001G382700--Sobic010G216600 Sobic003G314900 Sobic003G314900 Sobic001G382700--Sobic003G314900 Sobic003G418300 Sobic003G418300 Sobic001G382700--Sobic003G418300 Sobic009G242501 Sobic009G242501 Sobic001G382700--Sobic009G242501 Sobic007G208100 Sobic007G208100 Sobic001G382700--Sobic007G208100 Sobic003G294500 Sobic003G294500 Sobic001G382700--Sobic003G294500 Sobic005G098400 Sobic005G098400 Sobic001G382700--Sobic005G098400 Sobic006G149300 Sobic006G149300 Sobic001G382700--Sobic006G149300 Sobic010G134100--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic010G134100--Sobic001G413100 Sobic001G176900 Sobic001G176900 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic010G134100--Sobic001G493400 Sobic004G356300 Sobic004G356300 Sobic010G134100--Sobic004G356300 Sobic002G367800 Sobic002G367800 Sobic010G134100--Sobic002G367800 Sobic009G041800 Sobic009G041800 Sobic010G134100--Sobic009G041800 Sobic010G134100--Sobic004G082700 Sobic003G179500 Sobic003G179500 Sobic009G214100--Sobic003G179500 Sobic007G139500 Sobic007G139500 Sobic009G214100--Sobic007G139500 Sobic010G103700 Sobic010G103700 Sobic009G214100--Sobic010G103700 Sobic002G303800 Sobic002G303800 Sobic009G214100--Sobic002G303800 Sobic005G144600 Sobic005G144600 Sobic009G214100--Sobic005G144600 Sobic010G051100 Sobic010G051100 Sobic009G214100--Sobic010G051100 Sobic003G201000 Sobic003G201000 Sobic009G214100--Sobic003G201000 Sobic006G120600 Sobic006G120600 Sobic009G214100--Sobic006G120600 Sobic008G127550 Sobic008G127550 Sobic009G214100--Sobic008G127550 Sobic007G094400 Sobic007G094400 Sobic010G277300--Sobic007G094400 Sobic001G468500 Sobic001G468500 Sobic010G277300--Sobic001G468500 Sobic007G225400 Sobic007G225400 Sobic010G277300--Sobic007G225400 Sobic002G286700 Sobic002G286700 Sobic010G277300--Sobic002G286700 Sobic010G277300--Sobic005G047100 Sobic004G170900 Sobic004G170900 Sobic010G277300--Sobic004G170900 Sobic004G286700 Sobic004G286700 Sobic010G277300--Sobic004G286700 Sobic010G277300--Sobic009G242501 Sobic002G146601 Sobic002G146601 Sobic010G277300--Sobic002G146601 Sobic001G403200 Sobic001G403200 Sobic008G113800--Sobic001G403200 Sobic004G271500 Sobic004G271500 Sobic008G113800--Sobic004G271500 Sobic010G274000 Sobic010G274000 Sobic008G113800--Sobic010G274000 Sobic003G041700 Sobic003G041700 Sobic008G113800--Sobic003G041700 Sobic002G191000 Sobic002G191000 Sobic008G113800--Sobic002G191000 Sobic001G103000 Sobic001G103000 Sobic008G113800--Sobic001G103000 Sobic009G088200 Sobic009G088200 Sobic008G113800--Sobic009G088200 Sobic007G152900 Sobic007G152900 Sobic008G113800--Sobic007G152900 Sobic003G420100 Sobic003G420100 Sobic008G113800--Sobic003G420100 Sobic004G174700 Sobic004G174700 Sobic010G178600--Sobic004G174700 Sobic009G118900 Sobic009G118900 Sobic010G178600--Sobic009G118900 Sobic004G034300 Sobic004G034300 Sobic010G178600--Sobic004G034300 Sobic002G070600 Sobic002G070600 Sobic010G178600--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic010G178600--Sobic008G072200 Sobic010G178600--Sobic003G134800 Sobic004G336300 Sobic004G336300 Sobic010G178600--Sobic004G336300 Sobic001G117800 Sobic001G117800 Sobic010G178600--Sobic001G117800 Sobic003G029600 Sobic003G029600 Sobic010G178600--Sobic003G029600
Octagon: transcription factors


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