Gene annotation
Transcriptome id Sobic.003G445000.1,Sobic.003G445000.2
Synonym Sb03g047440
Functional annotation pectinacetylesterase domain containing protein, expressed
UniProt A0A1B6Q8J6 , C5XJF0
Pfam PF03283
Panther DB PTHR21562 PTHR21562:SF20
NCBI CDD KOG4287; Pectin acetylesterase and similar proteins
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT3G09410 : Pectinacetylesterase family protein
RAP-DB (Rice) LOC_Os01g74330.1 : pectinacetylesterase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025815 , Zm00025a003155 , Zm00025a038259
Brachypodium KQK07934 , KQK11791
Barley HORVU3Hr1G116360.23 , HORVU3Hr1G116360.22 , HORVU3Hr1G116360.21 , HORVU3Hr1G116360.4 , HORVU3Hr1G116360.6 , HORVU3Hr1G116360.7 , HORVU3Hr1G116360.1 , HORVU3Hr1G116360.2 , HORVU3Hr1G116360.3 , HORVU3Hr1G116360.9 , HORVU1Hr1G005140.24 , HORVU3Hr1G116360.16 , HORVU3Hr1G116360.17 , HORVU3Hr1G116360.14 , HORVU3Hr1G116360.15 , HORVU3Hr1G116360.12 , HORVU3Hr1G116360.13 , HORVU3Hr1G116360.11 , HORVU3Hr1G116360.18 , HORVU3Hr1G116360.19
Wheat TraesCS3A02G533200 , TraesCS3D02G538400 , TraesCS1D02G034900 , TraesCS1A02G033800 , TraesCS1B02G042000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G238300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLE6 - cellulose synthase-like family E, expressed -
2 Sobic.001G242800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
3 Sobic.010G178600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
4 Sobic.006G135000 RNA binding protein, putative, expressed K11090: LA, lupus La protein
5 Sobic.009G081500 per1-like family protein, putative, expressed -
6 Sobic.009G105900 amino acid permease family protein, putative, expressed K14427: SLC12A4_6, solute carrier family 12 (potassium/chloride transporter), member 4/6
7 Sobic.002G009300 expressed protein K01427: urease
8 Sobic.003G279800 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
9 Sobic.007G092600 ankyrin repeat-rich protein, putative, expressed K19044: E3 ubiquitin-protein ligase XBAT32/33
10 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
11 Sobic.008G129300 CPuORF5 - conserved peptide uORF-containing transcript, expressed -
12 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
13 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
14 Sobic.001G432300 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed K01663: imidazole glycerol-phosphate synthase
15 Sobic.004G152200 glycosyltransferase, putative, expressed -
16 Sobic.004G173600 OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed K09580: PDIA1, protein disulfide-isomerase A1
17 Sobic.008G088830 - -
18 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
19 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
20 Sobic.004G261300 NAD dependent epimerase/dehydratase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G445000 Sobic003G445000 Sobic002G238300 Sobic002G238300 Sobic003G445000--Sobic002G238300 Sobic001G242800 Sobic001G242800 Sobic003G445000--Sobic001G242800 Sobic010G178600 Sobic010G178600 Sobic003G445000--Sobic010G178600 Sobic006G135000 Sobic006G135000 Sobic003G445000--Sobic006G135000 Sobic009G081500 Sobic009G081500 Sobic003G445000--Sobic009G081500 Sobic009G105900 Sobic009G105900 Sobic003G445000--Sobic009G105900 Sobic002G009300 Sobic002G009300 Sobic003G445000--Sobic002G009300 Sobic003G279800 Sobic003G279800 Sobic003G445000--Sobic003G279800 Sobic007G092600 Sobic007G092600 Sobic003G445000--Sobic007G092600 Sobic001G067800 Sobic001G067800 Sobic002G238300--Sobic001G067800 Sobic005G134600 Sobic005G134600 Sobic002G238300--Sobic005G134600 Sobic002G238300--Sobic003G445000 Sobic007G106500 Sobic007G106500 Sobic002G238300--Sobic007G106500 Sobic004G161200 Sobic004G161200 Sobic002G238300--Sobic004G161200 Sobic007G120000 Sobic007G120000 Sobic002G238300--Sobic007G120000 Sobic001G131001 Sobic001G131001 Sobic002G238300--Sobic001G131001 Sobic003G287450 Sobic003G287450 Sobic002G238300--Sobic003G287450 Sobic004G161900 Sobic004G161900 Sobic002G238300--Sobic004G161900 Sobic002G392800 Sobic002G392800 Sobic001G242800--Sobic002G392800 Sobic002G319200 Sobic002G319200 Sobic001G242800--Sobic002G319200 Sobic004G152200 Sobic004G152200 Sobic001G242800--Sobic004G152200 Sobic008G004100 Sobic008G004100 Sobic001G242800--Sobic008G004100 Sobic001G112700 Sobic001G112700 Sobic001G242800--Sobic001G112700 Sobic009G126500 Sobic009G126500 Sobic001G242800--Sobic009G126500 Sobic001G432300 Sobic001G432300 Sobic001G242800--Sobic001G432300 Sobic009G151700 Sobic009G151700 Sobic001G242800--Sobic009G151700 Sobic006G177300 Sobic006G177300 Sobic001G242800--Sobic006G177300 Sobic004G174700 Sobic004G174700 Sobic010G178600--Sobic004G174700 Sobic009G118900 Sobic009G118900 Sobic010G178600--Sobic009G118900 Sobic004G034300 Sobic004G034300 Sobic010G178600--Sobic004G034300 Sobic002G070600 Sobic002G070600 Sobic010G178600--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic010G178600--Sobic008G072200 Sobic003G134800 Sobic003G134800 Sobic010G178600--Sobic003G134800 Sobic004G336300 Sobic004G336300 Sobic010G178600--Sobic004G336300 Sobic001G117800 Sobic001G117800 Sobic010G178600--Sobic001G117800 Sobic003G029600 Sobic003G029600 Sobic010G178600--Sobic003G029600 Sobic001G371100 Sobic001G371100 Sobic006G135000--Sobic001G371100 Sobic001G228200 Sobic001G228200 Sobic006G135000--Sobic001G228200 Sobic004G215700 Sobic004G215700 Sobic006G135000--Sobic004G215700 Sobic006G135000--Sobic003G279800 Sobic006G135000--Sobic003G445000 Sobic004G252000 Sobic004G252000 Sobic006G135000--Sobic004G252000 Sobic004G326600 Sobic004G326600 Sobic006G135000--Sobic004G326600 Sobic006G135000--Sobic002G319200 Sobic004G047200 Sobic004G047200 Sobic006G135000--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic009G081500--Sobic008G083400 Sobic006G281500 Sobic006G281500 Sobic009G081500--Sobic006G281500 Sobic009G151800 Sobic009G151800 Sobic009G081500--Sobic009G151800 Sobic001G460500 Sobic001G460500 Sobic009G081500--Sobic001G460500 Sobic006G251600 Sobic006G251600 Sobic009G081500--Sobic006G251600 Sobic007G188600 Sobic007G188600 Sobic009G081500--Sobic007G188600 Sobic002G423500 Sobic002G423500 Sobic009G081500--Sobic002G423500 Sobic001G004200 Sobic001G004200 Sobic009G081500--Sobic001G004200 Sobic006G208400 Sobic006G208400 Sobic009G081500--Sobic006G208400 Sobic002G327000 Sobic002G327000 Sobic009G105900--Sobic002G327000 Sobic009G105900--Sobic002G423500 Sobic006G056200 Sobic006G056200 Sobic009G105900--Sobic006G056200 Sobic007G010900 Sobic007G010900 Sobic009G105900--Sobic007G010900 Sobic006G173200 Sobic006G173200 Sobic009G105900--Sobic006G173200 Sobic005G163700 Sobic005G163700 Sobic009G105900--Sobic005G163700 Sobic009G105900--Sobic004G047200 Sobic009G105900--Sobic001G460500 Sobic002G194800 Sobic002G194800 Sobic009G105900--Sobic002G194800 Sobic008G088851 Sobic008G088851 Sobic002G009300--Sobic008G088851 Sobic008G088857 Sobic008G088857 Sobic002G009300--Sobic008G088857 Sobic009G139900 Sobic009G139900 Sobic002G009300--Sobic009G139900 Sobic002G009300--Sobic007G092600 Sobic002G308500 Sobic002G308500 Sobic002G009300--Sobic002G308500 Sobic010G188000 Sobic010G188000 Sobic002G009300--Sobic010G188000 Sobic004G290000 Sobic004G290000 Sobic002G009300--Sobic004G290000 Sobic003G235000 Sobic003G235000 Sobic002G009300--Sobic003G235000 Sobic002G009300--Sobic003G445000 Sobic003G279800--Sobic001G228200 Sobic005G115600 Sobic005G115600 Sobic003G279800--Sobic005G115600 Sobic003G279800--Sobic004G215700 Sobic003G279800--Sobic006G135000 Sobic008G129300 Sobic008G129300 Sobic003G279800--Sobic008G129300 Sobic009G017500 Sobic009G017500 Sobic003G279800--Sobic009G017500 Sobic007G143000 Sobic007G143000 Sobic003G279800--Sobic007G143000 Sobic003G279800--Sobic003G445000 Sobic002G383900 Sobic002G383900 Sobic003G279800--Sobic002G383900 Sobic001G540100 Sobic001G540100 Sobic007G092600--Sobic001G540100 Sobic004G127700 Sobic004G127700 Sobic007G092600--Sobic004G127700 Sobic007G092600--Sobic002G009300 Sobic007G092600--Sobic002G308500 Sobic001G328000 Sobic001G328000 Sobic007G092600--Sobic001G328000 Sobic002G408800 Sobic002G408800 Sobic007G092600--Sobic002G408800 Sobic010G106900 Sobic010G106900 Sobic007G092600--Sobic010G106900 Sobic007G092600--Sobic003G029600 Sobic010G002400 Sobic010G002400 Sobic007G092600--Sobic010G002400
Octagon: transcription factors


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