Gene annotation
Transcriptome id Sobic.006G135000.1
Synonym AtLa1, Sb06g021470, La1
Functional annotation RNA binding protein, putative, expressed
UniProt C5YBH2
Pfam PF14259 PF05383 PF08777
Panther DB PTHR22792 PTHR22792:SF64
NCBI CDD KOG4213; RNA-binding protein La
KEGG Orthology K11090; LA, lupus La protein
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT4G32720 : La protein 1
RAP-DB (Rice) LOC_Os04g42010.1 : RNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a032524 , Zm00025a011086 , Zm00025a056391
Brachypodium KQJ83375 , KQJ83386
Barley -
Wheat TraesCS2D02G351700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
2 Sobic.001G228200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
3 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
4 Sobic.003G279800 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
5 Sobic.003G445000 pectinacetylesterase domain containing protein, expressed -
6 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
7 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
8 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
9 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
10 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
11 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
12 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
13 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
14 Sobic.009G228500 60S ribosomal protein-related, putative, expressed K14775: UTP30, ribosome biogenesis protein UTP30
15 Sobic.007G108100 co-chaperone protein SBA1, putative, expressed -
16 Sobic.009G214100 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
17 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
18 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
19 Sobic.001G242800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
20 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58


Gene co-expression network
sample Sobic006G135000 Sobic006G135000 Sobic001G371100 Sobic001G371100 Sobic006G135000--Sobic001G371100 Sobic001G228200 Sobic001G228200 Sobic006G135000--Sobic001G228200 Sobic004G215700 Sobic004G215700 Sobic006G135000--Sobic004G215700 Sobic003G279800 Sobic003G279800 Sobic006G135000--Sobic003G279800 Sobic003G445000 Sobic003G445000 Sobic006G135000--Sobic003G445000 Sobic004G252000 Sobic004G252000 Sobic006G135000--Sobic004G252000 Sobic004G326600 Sobic004G326600 Sobic006G135000--Sobic004G326600 Sobic002G319200 Sobic002G319200 Sobic006G135000--Sobic002G319200 Sobic004G047200 Sobic004G047200 Sobic006G135000--Sobic004G047200 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G371100--Sobic001G228200 Sobic008G168100 Sobic008G168100 Sobic001G228200--Sobic008G168100 Sobic009G059500 Sobic009G059500 Sobic001G228200--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic001G228200--Sobic002G186900 Sobic001G228200--Sobic001G371100 Sobic003G146800 Sobic003G146800 Sobic001G228200--Sobic003G146800 Sobic001G228200--Sobic001G397000 Sobic007G113300 Sobic007G113300 Sobic001G228200--Sobic007G113300 Sobic002G280700 Sobic002G280700 Sobic001G228200--Sobic002G280700 Sobic001G228200--Sobic004G326600 Sobic002G423500 Sobic002G423500 Sobic004G215700--Sobic002G423500 Sobic004G215700--Sobic004G326600 Sobic005G163700 Sobic005G163700 Sobic004G215700--Sobic005G163700 Sobic006G024700 Sobic006G024700 Sobic004G215700--Sobic006G024700 Sobic004G215700--Sobic004G047200 Sobic001G460500 Sobic001G460500 Sobic004G215700--Sobic001G460500 Sobic003G008600 Sobic003G008600 Sobic004G215700--Sobic003G008600 Sobic003G388900 Sobic003G388900 Sobic004G215700--Sobic003G388900 Sobic004G212100 Sobic004G212100 Sobic004G215700--Sobic004G212100 Sobic003G279800--Sobic001G228200 Sobic005G115600 Sobic005G115600 Sobic003G279800--Sobic005G115600 Sobic003G279800--Sobic004G215700 Sobic003G279800--Sobic006G135000 Sobic008G129300 Sobic008G129300 Sobic003G279800--Sobic008G129300 Sobic009G017500 Sobic009G017500 Sobic003G279800--Sobic009G017500 Sobic007G143000 Sobic007G143000 Sobic003G279800--Sobic007G143000 Sobic003G279800--Sobic003G445000 Sobic002G383900 Sobic002G383900 Sobic003G279800--Sobic002G383900 Sobic002G238300 Sobic002G238300 Sobic003G445000--Sobic002G238300 Sobic001G242800 Sobic001G242800 Sobic003G445000--Sobic001G242800 Sobic010G178600 Sobic010G178600 Sobic003G445000--Sobic010G178600 Sobic003G445000--Sobic006G135000 Sobic009G081500 Sobic009G081500 Sobic003G445000--Sobic009G081500 Sobic009G105900 Sobic009G105900 Sobic003G445000--Sobic009G105900 Sobic002G009300 Sobic002G009300 Sobic003G445000--Sobic002G009300 Sobic003G445000--Sobic003G279800 Sobic007G092600 Sobic007G092600 Sobic003G445000--Sobic007G092600 Sobic004G252000--Sobic002G423500 Sobic004G252000--Sobic004G326600 Sobic002G014400 Sobic002G014400 Sobic004G252000--Sobic002G014400 Sobic009G235000 Sobic009G235000 Sobic004G252000--Sobic009G235000 Sobic009G258500 Sobic009G258500 Sobic004G252000--Sobic009G258500 Sobic002G365900 Sobic002G365900 Sobic004G252000--Sobic002G365900 Sobic004G252000--Sobic004G047200 Sobic006G135900 Sobic006G135900 Sobic004G252000--Sobic006G135900 Sobic006G084000 Sobic006G084000 Sobic004G252000--Sobic006G084000 Sobic004G326600--Sobic004G047200 Sobic004G326600--Sobic002G014400 Sobic004G326600--Sobic002G423500 Sobic001G091900 Sobic001G091900 Sobic004G326600--Sobic001G091900 Sobic004G326600--Sobic004G215700 Sobic002G341800 Sobic002G341800 Sobic004G326600--Sobic002G341800 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700 Sobic002G045100 Sobic002G045100 Sobic002G319200--Sobic002G045100 Sobic002G319200--Sobic001G242800 Sobic002G319200--Sobic001G371100 Sobic005G211200 Sobic005G211200 Sobic002G319200--Sobic005G211200 Sobic002G319200--Sobic010G032700 Sobic001G528600 Sobic001G528600 Sobic002G319200--Sobic001G528600 Sobic004G152200 Sobic004G152200 Sobic002G319200--Sobic004G152200 Sobic009G126500 Sobic009G126500 Sobic002G319200--Sobic009G126500 Sobic002G161700 Sobic002G161700 Sobic002G319200--Sobic002G161700 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic004G047200--Sobic002G014400 Sobic001G008500 Sobic001G008500 Sobic004G047200--Sobic001G008500 Sobic004G047200--Sobic005G163700 Sobic004G047200--Sobic001G530800 Sobic004G047200--Sobic004G215700 Sobic004G047200--Sobic001G460500 Sobic004G047200--Sobic001G371100
Octagon: transcription factors


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