Gene annotation
Transcriptome id Sobic.003G219400.2,Sobic.003G219400.1
Synonym Sb03g027820
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XR08
Pfam PF14259 PF00076
Panther DB PTHR24012 PTHR24012:SF490
NCBI CDD KOG4205; RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
KEGG Orthology K12741; heterogeneous nuclear ribonucleoprotein A1/A3
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G15010 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os01g42820.3 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a028727 , Zm00025a038495
Brachypodium KQK08714
Barley HORVU3Hr1G053990.3 , HORVU3Hr1G053990.2 , HORVU3Hr1G053990.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G219400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G153532 - -
2 Sobic.004G074200 abhydrolase domain-containing protein FAM108C1, putative, expressed -
3 Sobic.004G078300 expressed protein -
4 Sobic.002G034400 expressed protein -
5 Sobic.007G085350 - -
6 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
7 Sobic.007G017400 APOBEC1 complementation factor, putative, expressed K13161: heterogeneous nuclear ribonucleoprotein R
8 Sobic.003G264000 cytidylyltransferase domain containing protein, expressed -
9 Sobic.001G419900 Up-reguralion under heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
10 Sobic.004G357900 GHMP kinases ATP-binding protein, putative, expressed K00872: homoserine kinase
11 Sobic.003G223200 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
12 Sobic.001G362400 PPR repeat containing protein, expressed -
13 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
14 Sobic.009G114600 OsSigP6 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K03100: signal peptidase I
15 Sobic.007G013500 expressed protein -
16 Sobic.002G005700 - -
17 Sobic.004G134500 expressed protein -
18 Sobic.006G212000 PPR repeat domain containing protein, putative, expressed -
19 Sobic.001G063900 RING-H2 finger protein ATL5D, putative, expressed -
20 Sobic.007G043200 (31.4% identity with SbCCoAOMT/43.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic003G219400 Sobic003G219400 Sobic010G153532 Sobic010G153532 Sobic003G219400--Sobic010G153532 Sobic004G074200 Sobic004G074200 Sobic003G219400--Sobic004G074200 Sobic004G078300 Sobic004G078300 Sobic003G219400--Sobic004G078300 Sobic002G034400 Sobic002G034400 Sobic003G219400--Sobic002G034400 Sobic007G085350 Sobic007G085350 Sobic003G219400--Sobic007G085350 Sobic001G134600 Sobic001G134600 Sobic003G219400--Sobic001G134600 Sobic007G017400 Sobic007G017400 Sobic003G219400--Sobic007G017400 Sobic003G264000 Sobic003G264000 Sobic003G219400--Sobic003G264000 Sobic001G419900 Sobic001G419900 Sobic003G219400--Sobic001G419900 Sobic010G153532--Sobic004G074200 Sobic009G114600 Sobic009G114600 Sobic010G153532--Sobic009G114600 Sobic002G175550 Sobic002G175550 Sobic010G153532--Sobic002G175550 Sobic006G004000 Sobic006G004000 Sobic010G153532--Sobic006G004000 Sobic005G097700 Sobic005G097700 Sobic010G153532--Sobic005G097700 Sobic010G153532--Sobic003G219400 Sobic006G073150 Sobic006G073150 Sobic010G153532--Sobic006G073150 Sobic001G451200 Sobic001G451200 Sobic010G153532--Sobic001G451200 Sobic003G221300 Sobic003G221300 Sobic010G153532--Sobic003G221300 Sobic004G074200--Sobic009G114600 Sobic004G074200--Sobic010G153532 Sobic004G074200--Sobic003G221300 Sobic004G074200--Sobic005G097700 Sobic004G074200--Sobic002G034400 Sobic004G074200--Sobic007G085350 Sobic004G074200--Sobic002G175550 Sobic002G416200 Sobic002G416200 Sobic004G074200--Sobic002G416200 Sobic004G074200--Sobic003G219400 Sobic004G077600 Sobic004G077600 Sobic004G078300--Sobic004G077600 Sobic004G078300--Sobic003G219400 Sobic003G218700 Sobic003G218700 Sobic004G078300--Sobic003G218700 Sobic001G274700 Sobic001G274700 Sobic004G078300--Sobic001G274700 Sobic006G080000 Sobic006G080000 Sobic004G078300--Sobic006G080000 Sobic003G045200 Sobic003G045200 Sobic004G078300--Sobic003G045200 Sobic002G364000 Sobic002G364000 Sobic004G078300--Sobic002G364000 Sobic010G080600 Sobic010G080600 Sobic004G078300--Sobic010G080600 Sobic004G031400 Sobic004G031400 Sobic004G078300--Sobic004G031400 Sobic004G356600 Sobic004G356600 Sobic002G034400--Sobic004G356600 Sobic002G034400--Sobic005G097700 Sobic002G356700 Sobic002G356700 Sobic002G034400--Sobic002G356700 Sobic006G228400 Sobic006G228400 Sobic002G034400--Sobic006G228400 Sobic002G052500 Sobic002G052500 Sobic002G034400--Sobic002G052500 Sobic006G090201 Sobic006G090201 Sobic002G034400--Sobic006G090201 Sobic006G260600 Sobic006G260600 Sobic002G034400--Sobic006G260600 Sobic002G004400 Sobic002G004400 Sobic002G034400--Sobic002G004400 Sobic003G245700 Sobic003G245700 Sobic002G034400--Sobic003G245700 Sobic007G085350--Sobic004G356600 Sobic007G085350--Sobic002G356700 Sobic006G272450 Sobic006G272450 Sobic007G085350--Sobic006G272450 Sobic009G010800 Sobic009G010800 Sobic007G085350--Sobic009G010800 Sobic007G085350--Sobic006G090201 Sobic001G361500 Sobic001G361500 Sobic007G085350--Sobic001G361500 Sobic010G231400 Sobic010G231400 Sobic007G085350--Sobic010G231400 Sobic006G209100 Sobic006G209100 Sobic007G085350--Sobic006G209100 Sobic006G239100 Sobic006G239100 Sobic007G085350--Sobic006G239100 Sobic001G378550 Sobic001G378550 Sobic001G134600--Sobic001G378550 Sobic001G134600--Sobic002G052500 Sobic001G134600--Sobic001G419900 Sobic001G049000 Sobic001G049000 Sobic001G134600--Sobic001G049000 Sobic001G134600--Sobic004G356600 Sobic001G267266 Sobic001G267266 Sobic001G134600--Sobic001G267266 Sobic001G134600--Sobic006G090201 Sobic003G343100 Sobic003G343100 Sobic001G134600--Sobic003G343100 Sobic001G063900 Sobic001G063900 Sobic001G134600--Sobic001G063900 Sobic007G156101 Sobic007G156101 Sobic007G017400--Sobic007G156101 Sobic001G237700 Sobic001G237700 Sobic007G017400--Sobic001G237700 Sobic002G337300 Sobic002G337300 Sobic007G017400--Sobic002G337300 Sobic004G134500 Sobic004G134500 Sobic007G017400--Sobic004G134500 Sobic003G267900 Sobic003G267900 Sobic007G017400--Sobic003G267900 Sobic001G017900 Sobic001G017900 Sobic007G017400--Sobic001G017900 Sobic001G423700 Sobic001G423700 Sobic007G017400--Sobic001G423700 Sobic003G408800 Sobic003G408800 Sobic007G017400--Sobic003G408800 Sobic007G159800 Sobic007G159800 Sobic007G017400--Sobic007G159800 Sobic008G168000 Sobic008G168000 Sobic003G264000--Sobic008G168000 Sobic003G264000--Sobic002G034400 Sobic007G043200 Sobic007G043200 Sobic003G264000--Sobic007G043200 Sobic003G264000--Sobic003G219400 Sobic001G362400 Sobic001G362400 Sobic003G264000--Sobic001G362400 Sobic002G200500 Sobic002G200500 Sobic003G264000--Sobic002G200500 Sobic003G264000--Sobic001G267266 Sobic003G264000--Sobic002G052500 Sobic002G120200 Sobic002G120200 Sobic003G264000--Sobic002G120200 Sobic001G419900--Sobic001G134600 Sobic001G419900--Sobic002G034400 Sobic001G419900--Sobic005G097700 Sobic001G419900--Sobic002G052500 Sobic001G419900--Sobic004G356600 Sobic001G419900--Sobic001G378550 Sobic001G419900--Sobic006G090201 Sobic009G070900 Sobic009G070900 Sobic001G419900--Sobic009G070900 Sobic001G419900--Sobic002G175550
Octagon: transcription factors


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