Gene annotation
Transcriptome id Sobic.003G223200.1
Synonym ATPTB2, Sb03g028150, PTB2
Functional annotation polypyrimidine tract-binding protein, putative, expressed
UniProt C5XR40
Pfam PF14259 PF13893
Panther DB PTHR24012 PTHR24012:SF386
NCBI CDD KOG1190; Polypyrimidine tract-binding protein
KEGG Orthology K14948; PTBP2, polypyrimidine tract-binding protein 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53180 : polypyrimidine tract-binding protein 2
RAP-DB (Rice) LOC_Os01g43170.1 : polypyrimidine tract-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a005561 , Zm00025a031640 , Zm00025a028390
Brachypodium KQK08768
Barley HORVU3Hr1G055000.12 , HORVU3Hr1G055000.11 , HORVU3Hr1G055000.3 , HORVU3Hr1G055000.2 , HORVU3Hr1G055000.7 , HORVU3Hr1G055000.6 , HORVU3Hr1G055000.5 , HORVU3Hr1G055000.4 , HORVU3Hr1G055000.9 , HORVU3Hr1G055000.8
Wheat TraesCS3B02G253100 , TraesCS3B02G253100 , TraesCS3D02G229900 , TraesCS3D02G229900 , TraesCS3A02G223600 , TraesCS3A02G223600
Populus -


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cDNA sequences
Sobic.003G223200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G371500 RNA recognition motif containing protein, putative, expressed -
2 Sobic.003G363500 dual specificity protein phosphatase, putative, expressed -
3 Sobic.001G017800 vacuolar sorting protein, putative, expressed -
4 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
5 Sobic.001G423700 - K13171: SRRM1, serine/arginine repetitive matrix protein 1
6 Sobic.001G449400 ariadne-1, putative, expressed K11968: ariadne-1
7 Sobic.004G351600 expressed protein K18734: protein SMG8
8 Sobic.010G151900 ribonuclease P family protein, putative, expressed K03538: POP4, ribonuclease P protein subunit POP4
9 Sobic.003G219400 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
10 Sobic.005G154900 cytokinin inducible protein, putative, expressed -
11 Sobic.006G035300 expressed protein -
12 Sobic.006G253000 expressed protein -
13 Sobic.005G012400 nucleotidyltransferase, putative, expressed -
14 Sobic.002G103500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
15 Sobic.010G146400 "domain confirmed by Pfam database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA21 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
16 Sobic.003G059200 single myb histone, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.009G001300 AML1, putative, expressed -
18 Sobic.003G203400 serine/threonine-protein kinase AFC3, putative, expressed K08287: dual-specificity kinase
19 Sobic.001G507600 cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
20 Sobic.003G071500 geranylgeranyl transferase type-1 subunit beta, putative, expressed K11713: geranylgeranyl transferase type-1 subunit beta


Gene co-expression network
sample Sobic003G223200 Sobic003G223200 Sobic002G371500 Sobic002G371500 Sobic003G223200--Sobic002G371500 Sobic003G363500 Sobic003G363500 Sobic003G223200--Sobic003G363500 Sobic001G017800 Sobic001G017800 Sobic003G223200--Sobic001G017800 Sobic001G237700 Sobic001G237700 Sobic003G223200--Sobic001G237700 Sobic001G423700 Sobic001G423700 Sobic003G223200--Sobic001G423700 Sobic001G449400 Sobic001G449400 Sobic003G223200--Sobic001G449400 Sobic004G351600 Sobic004G351600 Sobic003G223200--Sobic004G351600 Sobic010G151900 Sobic010G151900 Sobic003G223200--Sobic010G151900 Sobic003G219400 Sobic003G219400 Sobic003G223200--Sobic003G219400 Sobic002G371500--Sobic003G363500 Sobic005G029100 Sobic005G029100 Sobic002G371500--Sobic005G029100 Sobic002G371500--Sobic003G223200 Sobic002G103500 Sobic002G103500 Sobic002G371500--Sobic002G103500 Sobic009G165800 Sobic009G165800 Sobic002G371500--Sobic009G165800 Sobic009G207000 Sobic009G207000 Sobic002G371500--Sobic009G207000 Sobic003G395100 Sobic003G395100 Sobic002G371500--Sobic003G395100 Sobic003G369900 Sobic003G369900 Sobic002G371500--Sobic003G369900 Sobic001G047400 Sobic001G047400 Sobic002G371500--Sobic001G047400 Sobic003G071500 Sobic003G071500 Sobic003G363500--Sobic003G071500 Sobic003G363500--Sobic002G103500 Sobic004G066200 Sobic004G066200 Sobic003G363500--Sobic004G066200 Sobic003G363500--Sobic002G371500 Sobic003G363500--Sobic010G151900 Sobic007G104800 Sobic007G104800 Sobic003G363500--Sobic007G104800 Sobic001G241100 Sobic001G241100 Sobic003G363500--Sobic001G241100 Sobic007G078600 Sobic007G078600 Sobic003G363500--Sobic007G078600 Sobic006G200600 Sobic006G200600 Sobic003G363500--Sobic006G200600 Sobic002G071500 Sobic002G071500 Sobic001G017800--Sobic002G071500 Sobic007G119200 Sobic007G119200 Sobic001G017800--Sobic007G119200 Sobic007G041500 Sobic007G041500 Sobic001G017800--Sobic007G041500 Sobic007G172400 Sobic007G172400 Sobic001G017800--Sobic007G172400 Sobic003G093800 Sobic003G093800 Sobic001G017800--Sobic003G093800 Sobic001G058700 Sobic001G058700 Sobic001G017800--Sobic001G058700 Sobic010G116600 Sobic010G116600 Sobic001G017800--Sobic010G116600 Sobic005G118600 Sobic005G118600 Sobic001G017800--Sobic005G118600 Sobic003G119000 Sobic003G119000 Sobic001G017800--Sobic003G119000 Sobic001G237700--Sobic001G423700 Sobic007G017400 Sobic007G017400 Sobic001G237700--Sobic007G017400 Sobic005G195800 Sobic005G195800 Sobic001G237700--Sobic005G195800 Sobic007G050400 Sobic007G050400 Sobic001G237700--Sobic007G050400 Sobic002G425800 Sobic002G425800 Sobic001G237700--Sobic002G425800 Sobic004G327400 Sobic004G327400 Sobic001G237700--Sobic004G327400 Sobic002G337300 Sobic002G337300 Sobic001G237700--Sobic002G337300 Sobic004G354700 Sobic004G354700 Sobic001G237700--Sobic004G354700 Sobic002G166500 Sobic002G166500 Sobic001G237700--Sobic002G166500 Sobic006G080300 Sobic006G080300 Sobic001G423700--Sobic006G080300 Sobic001G423700--Sobic001G237700 Sobic001G423700--Sobic005G195800 Sobic001G423700--Sobic002G337300 Sobic001G206100 Sobic001G206100 Sobic001G423700--Sobic001G206100 Sobic004G213000 Sobic004G213000 Sobic001G423700--Sobic004G213000 Sobic001G423700--Sobic002G166500 Sobic002G161000 Sobic002G161000 Sobic001G423700--Sobic002G161000 Sobic001G257300 Sobic001G257300 Sobic001G423700--Sobic001G257300 Sobic001G449400--Sobic003G093800 Sobic009G092400 Sobic009G092400 Sobic001G449400--Sobic009G092400 Sobic009G044800 Sobic009G044800 Sobic001G449400--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic001G449400--Sobic007G218000 Sobic001G263600 Sobic001G263600 Sobic001G449400--Sobic001G263600 Sobic001G451400 Sobic001G451400 Sobic001G449400--Sobic001G451400 Sobic001G227400 Sobic001G227400 Sobic001G449400--Sobic001G227400 Sobic001G354600 Sobic001G354600 Sobic001G449400--Sobic001G354600 Sobic001G449400--Sobic004G351600 Sobic009G256400 Sobic009G256400 Sobic004G351600--Sobic009G256400 Sobic007G063000 Sobic007G063000 Sobic004G351600--Sobic007G063000 Sobic003G166750 Sobic003G166750 Sobic004G351600--Sobic003G166750 Sobic002G042600 Sobic002G042600 Sobic004G351600--Sobic002G042600 Sobic003G095900 Sobic003G095900 Sobic004G351600--Sobic003G095900 Sobic004G276400 Sobic004G276400 Sobic004G351600--Sobic004G276400 Sobic002G133300 Sobic002G133300 Sobic004G351600--Sobic002G133300 Sobic009G165700 Sobic009G165700 Sobic004G351600--Sobic009G165700 Sobic001G370900 Sobic001G370900 Sobic004G351600--Sobic001G370900 Sobic006G253000 Sobic006G253000 Sobic010G151900--Sobic006G253000 Sobic003G006400 Sobic003G006400 Sobic010G151900--Sobic003G006400 Sobic010G166400 Sobic010G166400 Sobic010G151900--Sobic010G166400 Sobic001G441400 Sobic001G441400 Sobic010G151900--Sobic001G441400 Sobic004G006900 Sobic004G006900 Sobic010G151900--Sobic004G006900 Sobic003G187500 Sobic003G187500 Sobic010G151900--Sobic003G187500 Sobic008G014500 Sobic008G014500 Sobic010G151900--Sobic008G014500 Sobic006G195700 Sobic006G195700 Sobic010G151900--Sobic006G195700 Sobic005G027400 Sobic005G027400 Sobic010G151900--Sobic005G027400 Sobic010G153532 Sobic010G153532 Sobic003G219400--Sobic010G153532 Sobic004G074200 Sobic004G074200 Sobic003G219400--Sobic004G074200 Sobic004G078300 Sobic004G078300 Sobic003G219400--Sobic004G078300 Sobic002G034400 Sobic002G034400 Sobic003G219400--Sobic002G034400 Sobic007G085350 Sobic007G085350 Sobic003G219400--Sobic007G085350 Sobic001G134600 Sobic001G134600 Sobic003G219400--Sobic001G134600 Sobic003G219400--Sobic007G017400 Sobic003G264000 Sobic003G264000 Sobic003G219400--Sobic003G264000 Sobic001G419900 Sobic001G419900 Sobic003G219400--Sobic001G419900
Octagon: transcription factors


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