Gene annotation
Transcriptome id Sobic.005G012400.1
Synonym Sb05g001080
Functional annotation nucleotidyltransferase, putative, expressed
UniProt C5Y3G0
Pfam PF01909
Panther DB PTHR23092 PTHR23092:SF30
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016779; nucleotidyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G51620 : PAP/OAS1 substrate-binding domain superfamily
RAP-DB (Rice) LOC_Os11g02320.1 : nucleotidyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a033303 , Zm00025a029021
Brachypodium KQJ92508 , KQJ89463
Barley HORVU5Hr1G046560.8 , HORVU5Hr1G046560.10 , HORVU5Hr1G046560.11 , HORVU5Hr1G046560.12 , HORVU5Hr1G046560.13 , HORVU5Hr1G046560.14 , HORVU5Hr1G046560.15 , HORVU5Hr1G046560.16 , HORVU5Hr1G046560.17 , HORVU5Hr1G046560.18 , HORVU5Hr1G046560.19 , HORVU4Hr1G022680.8 , HORVU4Hr1G022680.9 , HORVU4Hr1G022680.1 , HORVU4Hr1G022680.2 , HORVU4Hr1G022680.3 , HORVU4Hr1G022680.4 , HORVU4Hr1G022680.5 , HORVU4Hr1G022680.6 , HORVU4Hr1G022680.7 , HORVU5Hr1G046560.2 , HORVU5Hr1G046560.3 , HORVU5Hr1G046560.1 , HORVU5Hr1G046560.6 , HORVU5Hr1G046560.7 , HORVU5Hr1G046560.4 , HORVU5Hr1G046560.5 , HORVU5Hr1G046560.9 , HORVU5Hr1G046560.25 , HORVU5Hr1G046560.24 , HORVU5Hr1G046560.27 , HORVU5Hr1G046560.26 , HORVU5Hr1G046560.21 , HORVU5Hr1G046560.20 , HORVU5Hr1G046560.23 , HORVU5Hr1G046560.22 , HORVU4Hr1G022680.12 , HORVU4Hr1G022680.13 , HORVU4Hr1G022680.10 , HORVU4Hr1G022680.11 , HORVU4Hr1G022680.14 , HORVU4Hr1G022680.15
Wheat TraesCS4A02G194700 , TraesCS4A02G194700 , TraesCS5A02G147600 , TraesCS5A02G147600 , TraesCS5A02G147600 , TraesCS4B02G120600 , TraesCS4B02G120600 , TraesCS4B02G120600 , TraesCS4B02G120600 , TraesCS4D02G118600 , TraesCS4D02G118600 , TraesCS5B02G146200 , TraesCS5B02G146200 , TraesCS5B02G146200 , TraesCS5D02G145000 , TraesCS5D02G145000 , TraesCS5D02G145000 , TraesCS5D02G145000
Populus -


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cDNA sequences
Sobic.005G012400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G035300 expressed protein -
2 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
3 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -
4 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23
5 Sobic.001G504200 HEAT repeat family protein, putative, expressed -
6 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
7 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
8 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
9 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
10 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
11 Sobic.001G017800 vacuolar sorting protein, putative, expressed -
12 Sobic.006G037700 phosphoribulokinase/Uridine kinase family protein, expressed -
13 Sobic.001G316700 amine oxidase, putative, expressed -
14 Sobic.001G423700 - K13171: SRRM1, serine/arginine repetitive matrix protein 1
15 Sobic.001G408200 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
16 Sobic.003G147000 phospholipase D p1, putative, expressed K01115: phospholipase D1/2
17 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
18 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
19 Sobic.003G223200 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
20 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase


Gene co-expression network
sample Sobic005G012400 Sobic005G012400 Sobic006G035300 Sobic006G035300 Sobic005G012400--Sobic006G035300 Sobic001G279100 Sobic001G279100 Sobic005G012400--Sobic001G279100 Sobic009G229800 Sobic009G229800 Sobic005G012400--Sobic009G229800 Sobic003G037900 Sobic003G037900 Sobic005G012400--Sobic003G037900 Sobic001G504200 Sobic001G504200 Sobic005G012400--Sobic001G504200 Sobic002G058500 Sobic002G058500 Sobic005G012400--Sobic002G058500 Sobic001G109800 Sobic001G109800 Sobic005G012400--Sobic001G109800 Sobic004G331100 Sobic004G331100 Sobic005G012400--Sobic004G331100 Sobic007G172400 Sobic007G172400 Sobic005G012400--Sobic007G172400 Sobic006G037700 Sobic006G037700 Sobic006G035300--Sobic006G037700 Sobic002G071500 Sobic002G071500 Sobic006G035300--Sobic002G071500 Sobic005G118600 Sobic005G118600 Sobic006G035300--Sobic005G118600 Sobic003G059750 Sobic003G059750 Sobic006G035300--Sobic003G059750 Sobic001G065000 Sobic001G065000 Sobic006G035300--Sobic001G065000 Sobic008G153000 Sobic008G153000 Sobic006G035300--Sobic008G153000 Sobic006G012500 Sobic006G012500 Sobic006G035300--Sobic006G012500 Sobic006G035300--Sobic001G109800 Sobic003G147000 Sobic003G147000 Sobic006G035300--Sobic003G147000 Sobic002G382600 Sobic002G382600 Sobic001G279100--Sobic002G382600 Sobic008G061100 Sobic008G061100 Sobic001G279100--Sobic008G061100 Sobic002G314900 Sobic002G314900 Sobic001G279100--Sobic002G314900 Sobic007G119200 Sobic007G119200 Sobic001G279100--Sobic007G119200 Sobic001G517500 Sobic001G517500 Sobic001G279100--Sobic001G517500 Sobic010G129600 Sobic010G129600 Sobic001G279100--Sobic010G129600 Sobic006G115466 Sobic006G115466 Sobic001G279100--Sobic006G115466 Sobic007G046200 Sobic007G046200 Sobic001G279100--Sobic007G046200 Sobic001G436900 Sobic001G436900 Sobic001G279100--Sobic001G436900 Sobic003G407300 Sobic003G407300 Sobic009G229800--Sobic003G407300 Sobic001G156100 Sobic001G156100 Sobic009G229800--Sobic001G156100 Sobic004G060900 Sobic004G060900 Sobic009G229800--Sobic004G060900 Sobic001G373200 Sobic001G373200 Sobic009G229800--Sobic001G373200 Sobic009G121100 Sobic009G121100 Sobic009G229800--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic009G229800--Sobic001G443900 Sobic002G419800 Sobic002G419800 Sobic009G229800--Sobic002G419800 Sobic009G057300 Sobic009G057300 Sobic009G229800--Sobic009G057300 Sobic009G229800--Sobic007G172400 Sobic004G134500 Sobic004G134500 Sobic003G037900--Sobic004G134500 Sobic001G316700 Sobic001G316700 Sobic003G037900--Sobic001G316700 Sobic008G075900 Sobic008G075900 Sobic003G037900--Sobic008G075900 Sobic002G166500 Sobic002G166500 Sobic003G037900--Sobic002G166500 Sobic006G248700 Sobic006G248700 Sobic003G037900--Sobic006G248700 Sobic006G122900 Sobic006G122900 Sobic003G037900--Sobic006G122900 Sobic008G093500 Sobic008G093500 Sobic003G037900--Sobic008G093500 Sobic001G423700 Sobic001G423700 Sobic003G037900--Sobic001G423700 Sobic003G284500 Sobic003G284500 Sobic003G037900--Sobic003G284500 Sobic010G201500 Sobic010G201500 Sobic001G504200--Sobic010G201500 Sobic006G046700 Sobic006G046700 Sobic001G504200--Sobic006G046700 Sobic001G504200--Sobic008G153000 Sobic001G504200--Sobic002G071500 Sobic001G504200--Sobic005G118600 Sobic008G084700 Sobic008G084700 Sobic001G504200--Sobic008G084700 Sobic001G306900 Sobic001G306900 Sobic001G504200--Sobic001G306900 Sobic004G246100 Sobic004G246100 Sobic001G504200--Sobic004G246100 Sobic004G031700 Sobic004G031700 Sobic001G504200--Sobic004G031700 Sobic006G139000 Sobic006G139000 Sobic002G058500--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic002G058500--Sobic001G227800 Sobic001G395700 Sobic001G395700 Sobic002G058500--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic002G058500--Sobic005G019800 Sobic002G215700 Sobic002G215700 Sobic002G058500--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic002G058500--Sobic004G101900 Sobic003G226200 Sobic003G226200 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic001G280000 Sobic001G280000 Sobic002G058500--Sobic001G280000 Sobic004G146500 Sobic004G146500 Sobic001G109800--Sobic004G146500 Sobic004G264400 Sobic004G264400 Sobic001G109800--Sobic004G264400 Sobic002G297200 Sobic002G297200 Sobic001G109800--Sobic002G297200 Sobic001G109800--Sobic007G119200 Sobic009G166300 Sobic009G166300 Sobic001G109800--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G109800--Sobic001G409600 Sobic001G109800--Sobic002G071500 Sobic001G220300 Sobic001G220300 Sobic001G109800--Sobic001G220300 Sobic009G026500 Sobic009G026500 Sobic001G109800--Sobic009G026500 Sobic007G075400 Sobic007G075400 Sobic004G331100--Sobic007G075400 Sobic009G027300 Sobic009G027300 Sobic004G331100--Sobic009G027300 Sobic004G331100--Sobic002G419800 Sobic003G101400 Sobic003G101400 Sobic004G331100--Sobic003G101400 Sobic001G290100 Sobic001G290100 Sobic004G331100--Sobic001G290100 Sobic001G050200 Sobic001G050200 Sobic004G331100--Sobic001G050200 Sobic004G347400 Sobic004G347400 Sobic004G331100--Sobic004G347400 Sobic003G118200 Sobic003G118200 Sobic004G331100--Sobic003G118200 Sobic004G065000 Sobic004G065000 Sobic004G331100--Sobic004G065000 Sobic001G058700 Sobic001G058700 Sobic007G172400--Sobic001G058700 Sobic007G172400--Sobic002G071500 Sobic001G050600 Sobic001G050600 Sobic007G172400--Sobic001G050600 Sobic007G172400--Sobic004G347400 Sobic007G172400--Sobic002G419800 Sobic001G219900 Sobic001G219900 Sobic007G172400--Sobic001G219900 Sobic004G113400 Sobic004G113400 Sobic007G172400--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic007G172400--Sobic001G474600 Sobic003G408600 Sobic003G408600 Sobic007G172400--Sobic003G408600
Octagon: transcription factors


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