Gene annotation
Transcriptome id Sobic.003G037900.1
Synonym Sb03g003400
Functional annotation ZOS3-23 - C2H2 zinc finger protein, expressed
UniProt C5XM20
Pfam PF12874
Panther DB PTHR23067
NCBI CDD KOG4727; U1-like Zn-finger protein
KEGG Orthology K12848; U4/U6.U5 tri-snRNP component SNU23
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05760 : C2H2 and C2HC zinc fingers superfamily protein
RAP-DB (Rice) LOC_Os03g61640.1 : ZOS3-23 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a023123 , Zm00025a023118
Brachypodium KQK12324
Barley HORVU2Hr1G109460.5 , HORVU2Hr1G109460.4 , HORVU2Hr1G109460.2 , HORVU2Hr1G109460.3 , HORVU2Hr1G109460.1
Wheat TraesCS2D02G490700 , TraesCS2A02G490300 , TraesCS2A02G490300 , TraesCS2A02G490300 , TraesCS4A02G414800 , TraesCS2B02G518600
Populus -


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cDNA sequences
Sobic.003G037900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G134500 expressed protein -
2 Sobic.001G316700 amine oxidase, putative, expressed -
3 Sobic.008G075900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
4 Sobic.002G166500 protein phosphatase 2C, putative, expressed K17500: integrin-linked kinase-associated serine/threonine phosphatase 2C
5 Sobic.006G248700 AAA-type ATPase family protein, putative, expressed -
6 Sobic.006G122900 expressed protein K15360: STRA13, CENPX, centromere protein X
7 Sobic.008G093500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
8 Sobic.001G423700 - K13171: SRRM1, serine/arginine repetitive matrix protein 1
9 Sobic.003G284500 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
10 Sobic.007G050400 - K12811: DDX46, ATP-dependent RNA helicase DDX46/PRP5
11 Sobic.001G199900 expressed protein -
12 Sobic.010G027800 Brix domain containing protein, putative, expressed K14846: ribosome production factor 1
13 Sobic.010G269500 WD domain, G-beta repeat domain containing protein, expressed K11804: DDB1- and CUL4-associated factor 8
14 Sobic.007G017400 APOBEC1 complementation factor, putative, expressed K13161: heterogeneous nuclear ribonucleoprotein R
15 Sobic.006G157300 expressed protein -
16 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
17 Sobic.009G125600 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
18 Sobic.005G012400 nucleotidyltransferase, putative, expressed -
19 Sobic.004G131100 expressed protein -
20 Sobic.004G310700 glutaredoxin 2, putative, expressed -


Gene co-expression network
sample Sobic003G037900 Sobic003G037900 Sobic004G134500 Sobic004G134500 Sobic003G037900--Sobic004G134500 Sobic001G316700 Sobic001G316700 Sobic003G037900--Sobic001G316700 Sobic008G075900 Sobic008G075900 Sobic003G037900--Sobic008G075900 Sobic002G166500 Sobic002G166500 Sobic003G037900--Sobic002G166500 Sobic006G248700 Sobic006G248700 Sobic003G037900--Sobic006G248700 Sobic006G122900 Sobic006G122900 Sobic003G037900--Sobic006G122900 Sobic008G093500 Sobic008G093500 Sobic003G037900--Sobic008G093500 Sobic001G423700 Sobic001G423700 Sobic003G037900--Sobic001G423700 Sobic003G284500 Sobic003G284500 Sobic003G037900--Sobic003G284500 Sobic007G017400 Sobic007G017400 Sobic004G134500--Sobic007G017400 Sobic004G134500--Sobic003G037900 Sobic001G199900 Sobic001G199900 Sobic004G134500--Sobic001G199900 Sobic007G050400 Sobic007G050400 Sobic004G134500--Sobic007G050400 Sobic007G106400 Sobic007G106400 Sobic004G134500--Sobic007G106400 Sobic002G293900 Sobic002G293900 Sobic004G134500--Sobic002G293900 Sobic001G237700 Sobic001G237700 Sobic004G134500--Sobic001G237700 Sobic002G337300 Sobic002G337300 Sobic004G134500--Sobic002G337300 Sobic007G222800 Sobic007G222800 Sobic004G134500--Sobic007G222800 Sobic001G316700--Sobic003G037900 Sobic001G316700--Sobic006G248700 Sobic001G316700--Sobic007G050400 Sobic010G269500 Sobic010G269500 Sobic001G316700--Sobic010G269500 Sobic005G012400 Sobic005G012400 Sobic001G316700--Sobic005G012400 Sobic001G316700--Sobic003G284500 Sobic002G422200 Sobic002G422200 Sobic001G316700--Sobic002G422200 Sobic003G176900 Sobic003G176900 Sobic001G316700--Sobic003G176900 Sobic005G076650 Sobic005G076650 Sobic001G316700--Sobic005G076650 Sobic002G272800 Sobic002G272800 Sobic008G075900--Sobic002G272800 Sobic002G411300 Sobic002G411300 Sobic008G075900--Sobic002G411300 Sobic008G075900--Sobic002G166500 Sobic004G210101 Sobic004G210101 Sobic008G075900--Sobic004G210101 Sobic008G075900--Sobic003G037900 Sobic002G200100 Sobic002G200100 Sobic008G075900--Sobic002G200100 Sobic001G119300 Sobic001G119300 Sobic008G075900--Sobic001G119300 Sobic008G045450 Sobic008G045450 Sobic008G075900--Sobic008G045450 Sobic005G229500 Sobic005G229500 Sobic008G075900--Sobic005G229500 Sobic006G080300 Sobic006G080300 Sobic002G166500--Sobic006G080300 Sobic003G259901 Sobic003G259901 Sobic002G166500--Sobic003G259901 Sobic006G210100 Sobic006G210100 Sobic002G166500--Sobic006G210100 Sobic002G106100 Sobic002G106100 Sobic002G166500--Sobic002G106100 Sobic008G116500 Sobic008G116500 Sobic002G166500--Sobic008G116500 Sobic002G157000 Sobic002G157000 Sobic002G166500--Sobic002G157000 Sobic007G217500 Sobic007G217500 Sobic002G166500--Sobic007G217500 Sobic001G206100 Sobic001G206100 Sobic002G166500--Sobic001G206100 Sobic001G257300 Sobic001G257300 Sobic002G166500--Sobic001G257300 Sobic004G123600 Sobic004G123600 Sobic006G248700--Sobic004G123600 Sobic001G381900 Sobic001G381900 Sobic006G248700--Sobic001G381900 Sobic006G248700--Sobic001G316700 Sobic003G028800 Sobic003G028800 Sobic006G248700--Sobic003G028800 Sobic006G248700--Sobic008G093500 Sobic003G211500 Sobic003G211500 Sobic006G248700--Sobic003G211500 Sobic006G248700--Sobic003G037900 Sobic004G310700 Sobic004G310700 Sobic006G248700--Sobic004G310700 Sobic007G062100 Sobic007G062100 Sobic006G248700--Sobic007G062100 Sobic003G396300 Sobic003G396300 Sobic006G122900--Sobic003G396300 Sobic006G073001 Sobic006G073001 Sobic006G122900--Sobic006G073001 Sobic008G081150 Sobic008G081150 Sobic006G122900--Sobic008G081150 Sobic006G122900--Sobic003G037900 Sobic006G122900--Sobic004G123600 Sobic004G307700 Sobic004G307700 Sobic006G122900--Sobic004G307700 Sobic006G266600 Sobic006G266600 Sobic006G122900--Sobic006G266600 Sobic006G122900--Sobic003G284500 Sobic006G122900--Sobic002G166500 Sobic008G093500--Sobic002G166500 Sobic006G256100 Sobic006G256100 Sobic008G093500--Sobic006G256100 Sobic001G446900 Sobic001G446900 Sobic008G093500--Sobic001G446900 Sobic008G124700 Sobic008G124700 Sobic008G093500--Sobic008G124700 Sobic008G093500--Sobic006G248700 Sobic001G133466 Sobic001G133466 Sobic008G093500--Sobic001G133466 Sobic001G274200 Sobic001G274200 Sobic008G093500--Sobic001G274200 Sobic001G420200 Sobic001G420200 Sobic008G093500--Sobic001G420200 Sobic003G241800 Sobic003G241800 Sobic008G093500--Sobic003G241800 Sobic001G423700--Sobic006G080300 Sobic001G423700--Sobic001G237700 Sobic005G195800 Sobic005G195800 Sobic001G423700--Sobic005G195800 Sobic001G423700--Sobic002G337300 Sobic001G423700--Sobic001G206100 Sobic004G213000 Sobic004G213000 Sobic001G423700--Sobic004G213000 Sobic001G423700--Sobic002G166500 Sobic002G161000 Sobic002G161000 Sobic001G423700--Sobic002G161000 Sobic001G423700--Sobic001G257300 Sobic003G128500 Sobic003G128500 Sobic003G284500--Sobic003G128500 Sobic007G072400 Sobic007G072400 Sobic003G284500--Sobic007G072400 Sobic004G109500 Sobic004G109500 Sobic003G284500--Sobic004G109500 Sobic009G088401 Sobic009G088401 Sobic003G284500--Sobic009G088401 Sobic009G050100 Sobic009G050100 Sobic003G284500--Sobic009G050100 Sobic002G173600 Sobic002G173600 Sobic003G284500--Sobic002G173600 Sobic004G107400 Sobic004G107400 Sobic003G284500--Sobic004G107400 Sobic003G390300 Sobic003G390300 Sobic003G284500--Sobic003G390300 Sobic010G152700 Sobic010G152700 Sobic003G284500--Sobic010G152700
Octagon: transcription factors


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