Gene annotation
Transcriptome id Sobic.007G050400.1
Synonym Sb07g004090
Functional annotation -
UniProt C5YHD5
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF25
NCBI CDD -
KEGG Orthology K12811; DDX46, ATP-dependent RNA helicase DDX46/PRP5
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G20920 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os08g06344.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a055114
Brachypodium KQK08489 , KQK08492 , PNT72280 , PNT72278 , PNT72279 , KQK08493 , KQK08490 , KQK08491
Barley HORVU0Hr1G020490.5 , HORVU0Hr1G020490.4 , HORVU0Hr1G020490.3 , HORVU0Hr1G020490.2 , HORVU0Hr1G020490.1
Wheat TraesCS7A02G298800 , TraesCS7A02G298800 , TraesCS7B02G187000 , TraesCS7D02G294500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
2 Sobic.010G269500 WD domain, G-beta repeat domain containing protein, expressed K11804: DDB1- and CUL4-associated factor 8
3 Sobic.002G337300 expressed protein -
4 Sobic.001G423700 - K13171: SRRM1, serine/arginine repetitive matrix protein 1
5 Sobic.003G037900 ZOS3-23 - C2H2 zinc finger protein, expressed K12848: U4/U6.U5 tri-snRNP component SNU23
6 Sobic.004G134500 expressed protein -
7 Sobic.004G327400 zinc finger CCCH-type with G patch domain-containing protein, putative, expressed -
8 Sobic.007G013500 expressed protein -
9 Sobic.009G255300 OsClp8 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.001G316700 amine oxidase, putative, expressed -
11 Sobic.003G176900 BAH domain containing protein, expressed -
12 Sobic.007G017400 APOBEC1 complementation factor, putative, expressed K13161: heterogeneous nuclear ribonucleoprotein R
13 Sobic.002G264500 expressed protein -
14 Sobic.006G004000 - -
15 Sobic.001G174900 DEK C terminal domain containing protein, expressed K17046: protein DEK
16 Sobic.002G425800 protein transport protein, putative, expressed -
17 Sobic.005G033300 microfibrillar-associated protein 1, putative, expressed K13110: microfibrillar-associated protein 1
18 Sobic.004G354700 PCF-like (ClassI) Subclade 1 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
19 Sobic.007G222800 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
20 Sobic.003G219400 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3


Gene co-expression network
sample Sobic007G050400 Sobic007G050400 Sobic001G237700 Sobic001G237700 Sobic007G050400--Sobic001G237700 Sobic010G269500 Sobic010G269500 Sobic007G050400--Sobic010G269500 Sobic002G337300 Sobic002G337300 Sobic007G050400--Sobic002G337300 Sobic001G423700 Sobic001G423700 Sobic007G050400--Sobic001G423700 Sobic003G037900 Sobic003G037900 Sobic007G050400--Sobic003G037900 Sobic004G134500 Sobic004G134500 Sobic007G050400--Sobic004G134500 Sobic004G327400 Sobic004G327400 Sobic007G050400--Sobic004G327400 Sobic007G013500 Sobic007G013500 Sobic007G050400--Sobic007G013500 Sobic009G255300 Sobic009G255300 Sobic007G050400--Sobic009G255300 Sobic001G237700--Sobic001G423700 Sobic007G017400 Sobic007G017400 Sobic001G237700--Sobic007G017400 Sobic005G195800 Sobic005G195800 Sobic001G237700--Sobic005G195800 Sobic001G237700--Sobic007G050400 Sobic002G425800 Sobic002G425800 Sobic001G237700--Sobic002G425800 Sobic001G237700--Sobic004G327400 Sobic001G237700--Sobic002G337300 Sobic004G354700 Sobic004G354700 Sobic001G237700--Sobic004G354700 Sobic002G166500 Sobic002G166500 Sobic001G237700--Sobic002G166500 Sobic010G269500--Sobic007G050400 Sobic003G189800 Sobic003G189800 Sobic010G269500--Sobic003G189800 Sobic004G300500 Sobic004G300500 Sobic010G269500--Sobic004G300500 Sobic010G269500--Sobic003G037900 Sobic001G362800 Sobic001G362800 Sobic010G269500--Sobic001G362800 Sobic006G157300 Sobic006G157300 Sobic010G269500--Sobic006G157300 Sobic004G242300 Sobic004G242300 Sobic010G269500--Sobic004G242300 Sobic001G316700 Sobic001G316700 Sobic010G269500--Sobic001G316700 Sobic003G365400 Sobic003G365400 Sobic010G269500--Sobic003G365400 Sobic002G337300--Sobic001G423700 Sobic002G337300--Sobic007G017400 Sobic002G337300--Sobic007G050400 Sobic002G337300--Sobic001G237700 Sobic003G408800 Sobic003G408800 Sobic002G337300--Sobic003G408800 Sobic002G297800 Sobic002G297800 Sobic002G337300--Sobic002G297800 Sobic007G156101 Sobic007G156101 Sobic002G337300--Sobic007G156101 Sobic003G176900 Sobic003G176900 Sobic002G337300--Sobic003G176900 Sobic006G204200 Sobic006G204200 Sobic002G337300--Sobic006G204200 Sobic006G080300 Sobic006G080300 Sobic001G423700--Sobic006G080300 Sobic001G423700--Sobic001G237700 Sobic001G423700--Sobic005G195800 Sobic001G423700--Sobic002G337300 Sobic001G206100 Sobic001G206100 Sobic001G423700--Sobic001G206100 Sobic004G213000 Sobic004G213000 Sobic001G423700--Sobic004G213000 Sobic001G423700--Sobic002G166500 Sobic002G161000 Sobic002G161000 Sobic001G423700--Sobic002G161000 Sobic001G257300 Sobic001G257300 Sobic001G423700--Sobic001G257300 Sobic003G037900--Sobic004G134500 Sobic003G037900--Sobic001G316700 Sobic008G075900 Sobic008G075900 Sobic003G037900--Sobic008G075900 Sobic003G037900--Sobic002G166500 Sobic006G248700 Sobic006G248700 Sobic003G037900--Sobic006G248700 Sobic006G122900 Sobic006G122900 Sobic003G037900--Sobic006G122900 Sobic008G093500 Sobic008G093500 Sobic003G037900--Sobic008G093500 Sobic003G037900--Sobic001G423700 Sobic003G284500 Sobic003G284500 Sobic003G037900--Sobic003G284500 Sobic004G134500--Sobic007G017400 Sobic004G134500--Sobic003G037900 Sobic001G199900 Sobic001G199900 Sobic004G134500--Sobic001G199900 Sobic004G134500--Sobic007G050400 Sobic007G106400 Sobic007G106400 Sobic004G134500--Sobic007G106400 Sobic002G293900 Sobic002G293900 Sobic004G134500--Sobic002G293900 Sobic004G134500--Sobic001G237700 Sobic004G134500--Sobic002G337300 Sobic007G222800 Sobic007G222800 Sobic004G134500--Sobic007G222800 Sobic004G327400--Sobic001G237700 Sobic009G209300 Sobic009G209300 Sobic004G327400--Sobic009G209300 Sobic004G327400--Sobic001G423700 Sobic009G191100 Sobic009G191100 Sobic004G327400--Sobic009G191100 Sobic010G255300 Sobic010G255300 Sobic004G327400--Sobic010G255300 Sobic001G161800 Sobic001G161800 Sobic004G327400--Sobic001G161800 Sobic004G327400--Sobic007G050400 Sobic004G182900 Sobic004G182900 Sobic004G327400--Sobic004G182900 Sobic005G063000 Sobic005G063000 Sobic004G327400--Sobic005G063000 Sobic003G179100 Sobic003G179100 Sobic007G013500--Sobic003G179100 Sobic001G115800 Sobic001G115800 Sobic007G013500--Sobic001G115800 Sobic010G073300 Sobic010G073300 Sobic007G013500--Sobic010G073300 Sobic007G013500--Sobic009G255300 Sobic006G278500 Sobic006G278500 Sobic007G013500--Sobic006G278500 Sobic004G192700 Sobic004G192700 Sobic007G013500--Sobic004G192700 Sobic006G139600 Sobic006G139600 Sobic007G013500--Sobic006G139600 Sobic001G519300 Sobic001G519300 Sobic007G013500--Sobic001G519300 Sobic004G275500 Sobic004G275500 Sobic007G013500--Sobic004G275500 Sobic009G255300--Sobic003G179100 Sobic009G255300--Sobic007G013500 Sobic009G255300--Sobic006G278500 Sobic010G036000 Sobic010G036000 Sobic009G255300--Sobic010G036000 Sobic002G285300 Sobic002G285300 Sobic009G255300--Sobic002G285300 Sobic004G072000 Sobic004G072000 Sobic009G255300--Sobic004G072000 Sobic009G255300--Sobic010G073300 Sobic003G440400 Sobic003G440400 Sobic009G255300--Sobic003G440400 Sobic008G139900 Sobic008G139900 Sobic009G255300--Sobic008G139900
Octagon: transcription factors


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