Gene annotation
Transcriptome id Sobic.007G222800.1
Synonym Sb07g028800
Functional annotation RNA recognition motif family protein, expressed
UniProt C5YJD1
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF425
NCBI CDD KOG0114; Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology K14398; cleavage and polyadenylation specificity factor subunit 6/7
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G55670 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g38240.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a004969 , Zm00025a004970 , Zm00025a033726
Brachypodium PNT64786 , PNT68332
Barley -
Wheat TraesCS5A02G252300 , TraesCS5D02G259900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G222800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G080000 protein of unknown function domain containing protein, expressed K14525: ribonucleases P/MRP protein subunit RPP25
2 Sobic.005G033300 microfibrillar-associated protein 1, putative, expressed K13110: microfibrillar-associated protein 1
3 Sobic.007G096200 WD-40 repeat protein family, putative, expressed -
4 Sobic.002G140900 splicing factor, putative, expressed K12849: pre-mRNA-splicing factor 38A
5 Sobic.004G134500 expressed protein -
6 Sobic.001G199900 expressed protein -
7 Sobic.005G164500 expressed protein -
8 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
9 Sobic.009G105800 FHA domain containing protein, putative, expressed K13108: smad nuclear-interacting protein 1
10 Sobic.002G427300 protein phosphotase protein, putative, expressed -
11 Sobic.004G254600 RNA methyltransferase domain-containing protein 2, putative, expressed K15445: TRMT10, TRM10, tRNA (guanine9-N1)-methyltransferase
12 Sobic.001G280400 ankyrin repeat domain-containing protein 28, putative, expressed -
13 Sobic.002G068100 aminoacyl-tRNA synthetase, putative, expressed -
14 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
15 Sobic.007G046400 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.003G219400 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
17 Sobic.004G339600 ankyrin repeat domain containing protein, expressed -
18 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
19 Sobic.002G082100 serine/threonine-protein kinase, putative, expressed -
20 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29


Gene co-expression network
sample Sobic007G222800 Sobic007G222800 Sobic006G080000 Sobic006G080000 Sobic007G222800--Sobic006G080000 Sobic005G033300 Sobic005G033300 Sobic007G222800--Sobic005G033300 Sobic007G096200 Sobic007G096200 Sobic007G222800--Sobic007G096200 Sobic002G140900 Sobic002G140900 Sobic007G222800--Sobic002G140900 Sobic004G134500 Sobic004G134500 Sobic007G222800--Sobic004G134500 Sobic001G199900 Sobic001G199900 Sobic007G222800--Sobic001G199900 Sobic005G164500 Sobic005G164500 Sobic007G222800--Sobic005G164500 Sobic010G171100 Sobic010G171100 Sobic007G222800--Sobic010G171100 Sobic009G105800 Sobic009G105800 Sobic007G222800--Sobic009G105800 Sobic006G080000--Sobic007G222800 Sobic001G448700 Sobic001G448700 Sobic006G080000--Sobic001G448700 Sobic010G060000 Sobic010G060000 Sobic006G080000--Sobic010G060000 Sobic008G081150 Sobic008G081150 Sobic006G080000--Sobic008G081150 Sobic002G290300 Sobic002G290300 Sobic006G080000--Sobic002G290300 Sobic004G078300 Sobic004G078300 Sobic006G080000--Sobic004G078300 Sobic004G117800 Sobic004G117800 Sobic006G080000--Sobic004G117800 Sobic009G094800 Sobic009G094800 Sobic006G080000--Sobic009G094800 Sobic006G080000--Sobic010G171100 Sobic001G053800 Sobic001G053800 Sobic005G033300--Sobic001G053800 Sobic005G196900 Sobic005G196900 Sobic005G033300--Sobic005G196900 Sobic005G033300--Sobic007G222800 Sobic007G216900 Sobic007G216900 Sobic005G033300--Sobic007G216900 Sobic002G180000 Sobic002G180000 Sobic005G033300--Sobic002G180000 Sobic002G224700 Sobic002G224700 Sobic005G033300--Sobic002G224700 Sobic004G153200 Sobic004G153200 Sobic005G033300--Sobic004G153200 Sobic004G264300 Sobic004G264300 Sobic005G033300--Sobic004G264300 Sobic009G162200 Sobic009G162200 Sobic005G033300--Sobic009G162200 Sobic001G280400 Sobic001G280400 Sobic007G096200--Sobic001G280400 Sobic007G096200--Sobic007G222800 Sobic003G211100 Sobic003G211100 Sobic007G096200--Sobic003G211100 Sobic007G114000 Sobic007G114000 Sobic007G096200--Sobic007G114000 Sobic003G273300 Sobic003G273300 Sobic007G096200--Sobic003G273300 Sobic004G190600 Sobic004G190600 Sobic007G096200--Sobic004G190600 Sobic010G038800 Sobic010G038800 Sobic007G096200--Sobic010G038800 Sobic002G152900 Sobic002G152900 Sobic007G096200--Sobic002G152900 Sobic007G096200--Sobic005G164500 Sobic001G247000 Sobic001G247000 Sobic002G140900--Sobic001G247000 Sobic002G140900--Sobic007G222800 Sobic003G189800 Sobic003G189800 Sobic002G140900--Sobic003G189800 Sobic003G284500 Sobic003G284500 Sobic002G140900--Sobic003G284500 Sobic002G340350 Sobic002G340350 Sobic002G140900--Sobic002G340350 Sobic009G050100 Sobic009G050100 Sobic002G140900--Sobic009G050100 Sobic006G157300 Sobic006G157300 Sobic002G140900--Sobic006G157300 Sobic001G331100 Sobic001G331100 Sobic002G140900--Sobic001G331100 Sobic004G043200 Sobic004G043200 Sobic002G140900--Sobic004G043200 Sobic007G017400 Sobic007G017400 Sobic004G134500--Sobic007G017400 Sobic003G037900 Sobic003G037900 Sobic004G134500--Sobic003G037900 Sobic004G134500--Sobic001G199900 Sobic007G050400 Sobic007G050400 Sobic004G134500--Sobic007G050400 Sobic007G106400 Sobic007G106400 Sobic004G134500--Sobic007G106400 Sobic002G293900 Sobic002G293900 Sobic004G134500--Sobic002G293900 Sobic001G237700 Sobic001G237700 Sobic004G134500--Sobic001G237700 Sobic002G337300 Sobic002G337300 Sobic004G134500--Sobic002G337300 Sobic004G134500--Sobic007G222800 Sobic001G199900--Sobic004G134500 Sobic001G199900--Sobic003G037900 Sobic004G307700 Sobic004G307700 Sobic001G199900--Sobic004G307700 Sobic006G122900 Sobic006G122900 Sobic001G199900--Sobic006G122900 Sobic001G199900--Sobic007G222800 Sobic002G287500 Sobic002G287500 Sobic001G199900--Sobic002G287500 Sobic001G199900--Sobic005G033300 Sobic002G228600 Sobic002G228600 Sobic001G199900--Sobic002G228600 Sobic005G076650 Sobic005G076650 Sobic001G199900--Sobic005G076650 Sobic005G164500--Sobic001G280400 Sobic004G027000 Sobic004G027000 Sobic005G164500--Sobic004G027000 Sobic005G164500--Sobic004G117800 Sobic007G013300 Sobic007G013300 Sobic005G164500--Sobic007G013300 Sobic010G085200 Sobic010G085200 Sobic005G164500--Sobic010G085200 Sobic002G394800 Sobic002G394800 Sobic005G164500--Sobic002G394800 Sobic001G469200 Sobic001G469200 Sobic005G164500--Sobic001G469200 Sobic002G058700 Sobic002G058700 Sobic005G164500--Sobic002G058700 Sobic001G426100 Sobic001G426100 Sobic005G164500--Sobic001G426100 Sobic004G095300 Sobic004G095300 Sobic010G171100--Sobic004G095300 Sobic003G122500 Sobic003G122500 Sobic010G171100--Sobic003G122500 Sobic003G123000 Sobic003G123000 Sobic010G171100--Sobic003G123000 Sobic010G228700 Sobic010G228700 Sobic010G171100--Sobic010G228700 Sobic005G220000 Sobic005G220000 Sobic010G171100--Sobic005G220000 Sobic010G171100--Sobic010G085200 Sobic001G088100 Sobic001G088100 Sobic010G171100--Sobic001G088100 Sobic010G171100--Sobic002G058700 Sobic007G084100 Sobic007G084100 Sobic010G171100--Sobic007G084100 Sobic007G000300 Sobic007G000300 Sobic009G105800--Sobic007G000300 Sobic009G105800--Sobic010G228700 Sobic010G078900 Sobic010G078900 Sobic009G105800--Sobic010G078900 Sobic009G182600 Sobic009G182600 Sobic009G105800--Sobic009G182600 Sobic001G261900 Sobic001G261900 Sobic009G105800--Sobic001G261900 Sobic009G126300 Sobic009G126300 Sobic009G105800--Sobic009G126300 Sobic009G105800--Sobic005G220000 Sobic004G237100 Sobic004G237100 Sobic009G105800--Sobic004G237100 Sobic003G379200 Sobic003G379200 Sobic009G105800--Sobic003G379200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.