Gene annotation
Transcriptome id Sobic.007G096200.1
Synonym Sb07g009510
Functional annotation WD-40 repeat protein family, putative, expressed
UniProt C5YJW5
Pfam -
Panther DB PTHR22652 PTHR22652:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G30840 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os08g16600.1 : WD-40 repeat protein family, putative, expressed
MaizeGDB (Corn) Zm00025a030869
Brachypodium KQJ95838 , KQJ95837
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G280400 ankyrin repeat domain-containing protein 28, putative, expressed -
2 Sobic.007G222800 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
3 Sobic.003G211100 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
4 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
5 Sobic.003G273300 single myb histone, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.004G190600 SET, putative, expressed K11290: SET, TAF1, template-activating factor I
7 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
8 Sobic.002G152900 OsTOP6B - Topoisomerase 6 subunit B, expressed -
9 Sobic.005G164500 expressed protein -
10 Sobic.003G209400 expressed protein -
11 Sobic.004G254600 RNA methyltransferase domain-containing protein 2, putative, expressed K15445: TRMT10, TRM10, tRNA (guanine9-N1)-methyltransferase
12 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
13 Sobic.002G380600 transcription elongation factor SPT4 homolog 1, putative, expressed K15171: SUPT4H1, transcription elongation factor SPT4
14 Sobic.002G318800 - K14776: DDX10, ATP-dependent RNA helicase DDX10/DBP4
15 Sobic.001G099800 nucleic acid binding protein, putative, expressed -
16 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
17 Sobic.004G305700 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
18 Sobic.009G201200 WD domain, G-beta repeat domain containing protein, expressed K14558: PWP2, periodic tryptophan protein 2
19 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
20 Sobic.009G228300 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21


Gene co-expression network
sample Sobic007G096200 Sobic007G096200 Sobic001G280400 Sobic001G280400 Sobic007G096200--Sobic001G280400 Sobic007G222800 Sobic007G222800 Sobic007G096200--Sobic007G222800 Sobic003G211100 Sobic003G211100 Sobic007G096200--Sobic003G211100 Sobic007G114000 Sobic007G114000 Sobic007G096200--Sobic007G114000 Sobic003G273300 Sobic003G273300 Sobic007G096200--Sobic003G273300 Sobic004G190600 Sobic004G190600 Sobic007G096200--Sobic004G190600 Sobic010G038800 Sobic010G038800 Sobic007G096200--Sobic010G038800 Sobic002G152900 Sobic002G152900 Sobic007G096200--Sobic002G152900 Sobic005G164500 Sobic005G164500 Sobic007G096200--Sobic005G164500 Sobic001G280400--Sobic005G164500 Sobic004G117800 Sobic004G117800 Sobic001G280400--Sobic004G117800 Sobic008G051100 Sobic008G051100 Sobic001G280400--Sobic008G051100 Sobic005G100900 Sobic005G100900 Sobic001G280400--Sobic005G100900 Sobic001G099800 Sobic001G099800 Sobic001G280400--Sobic001G099800 Sobic003G209400 Sobic003G209400 Sobic001G280400--Sobic003G209400 Sobic004G027000 Sobic004G027000 Sobic001G280400--Sobic004G027000 Sobic004G136500 Sobic004G136500 Sobic001G280400--Sobic004G136500 Sobic001G132900 Sobic001G132900 Sobic001G280400--Sobic001G132900 Sobic006G080000 Sobic006G080000 Sobic007G222800--Sobic006G080000 Sobic005G033300 Sobic005G033300 Sobic007G222800--Sobic005G033300 Sobic007G222800--Sobic007G096200 Sobic002G140900 Sobic002G140900 Sobic007G222800--Sobic002G140900 Sobic004G134500 Sobic004G134500 Sobic007G222800--Sobic004G134500 Sobic001G199900 Sobic001G199900 Sobic007G222800--Sobic001G199900 Sobic007G222800--Sobic005G164500 Sobic010G171100 Sobic010G171100 Sobic007G222800--Sobic010G171100 Sobic009G105800 Sobic009G105800 Sobic007G222800--Sobic009G105800 Sobic007G108100 Sobic007G108100 Sobic003G211100--Sobic007G108100 Sobic002G045100 Sobic002G045100 Sobic003G211100--Sobic002G045100 Sobic003G117100 Sobic003G117100 Sobic003G211100--Sobic003G117100 Sobic007G137350 Sobic007G137350 Sobic003G211100--Sobic007G137350 Sobic010G001800 Sobic010G001800 Sobic003G211100--Sobic010G001800 Sobic001G371100 Sobic001G371100 Sobic003G211100--Sobic001G371100 Sobic001G530800 Sobic001G530800 Sobic003G211100--Sobic001G530800 Sobic010G018000 Sobic010G018000 Sobic003G211100--Sobic010G018000 Sobic001G235700 Sobic001G235700 Sobic003G211100--Sobic001G235700 Sobic007G114000--Sobic005G100900 Sobic006G035500 Sobic006G035500 Sobic007G114000--Sobic006G035500 Sobic010G188000 Sobic010G188000 Sobic007G114000--Sobic010G188000 Sobic007G114000--Sobic002G152900 Sobic009G071700 Sobic009G071700 Sobic007G114000--Sobic009G071700 Sobic010G161525 Sobic010G161525 Sobic007G114000--Sobic010G161525 Sobic006G157000 Sobic006G157000 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic001G368100 Sobic001G368100 Sobic007G114000--Sobic001G368100 Sobic008G101900 Sobic008G101900 Sobic003G273300--Sobic008G101900 Sobic003G182100 Sobic003G182100 Sobic003G273300--Sobic003G182100 Sobic003G218700 Sobic003G218700 Sobic003G273300--Sobic003G218700 Sobic004G354000 Sobic004G354000 Sobic003G273300--Sobic004G354000 Sobic004G128200 Sobic004G128200 Sobic003G273300--Sobic004G128200 Sobic003G399100 Sobic003G399100 Sobic003G273300--Sobic003G399100 Sobic006G208400 Sobic006G208400 Sobic003G273300--Sobic006G208400 Sobic005G111000 Sobic005G111000 Sobic003G273300--Sobic005G111000 Sobic003G425100 Sobic003G425100 Sobic003G273300--Sobic003G425100 Sobic004G190600--Sobic001G235700 Sobic002G303800 Sobic002G303800 Sobic004G190600--Sobic002G303800 Sobic001G440900 Sobic001G440900 Sobic004G190600--Sobic001G440900 Sobic004G208100 Sobic004G208100 Sobic004G190600--Sobic004G208100 Sobic001G081700 Sobic001G081700 Sobic004G190600--Sobic001G081700 Sobic010G032700 Sobic010G032700 Sobic004G190600--Sobic010G032700 Sobic010G054600 Sobic010G054600 Sobic004G190600--Sobic010G054600 Sobic001G146900 Sobic001G146900 Sobic004G190600--Sobic001G146900 Sobic004G190600--Sobic001G371100 Sobic004G215900 Sobic004G215900 Sobic010G038800--Sobic004G215900 Sobic003G144000 Sobic003G144000 Sobic010G038800--Sobic003G144000 Sobic009G191500 Sobic009G191500 Sobic010G038800--Sobic009G191500 Sobic010G153300 Sobic010G153300 Sobic010G038800--Sobic010G153300 Sobic001G408300 Sobic001G408300 Sobic010G038800--Sobic001G408300 Sobic001G372800 Sobic001G372800 Sobic010G038800--Sobic001G372800 Sobic003G322200 Sobic003G322200 Sobic010G038800--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic010G038800--Sobic003G123200 Sobic008G068100 Sobic008G068100 Sobic010G038800--Sobic008G068100 Sobic004G038100 Sobic004G038100 Sobic002G152900--Sobic004G038100 Sobic002G214700 Sobic002G214700 Sobic002G152900--Sobic002G214700 Sobic010G250800 Sobic010G250800 Sobic002G152900--Sobic010G250800 Sobic002G152900--Sobic007G114000 Sobic002G152900--Sobic001G368100 Sobic002G152900--Sobic004G215900 Sobic002G056400 Sobic002G056400 Sobic002G152900--Sobic002G056400 Sobic003G250900 Sobic003G250900 Sobic002G152900--Sobic003G250900 Sobic006G181800 Sobic006G181800 Sobic002G152900--Sobic006G181800 Sobic005G164500--Sobic001G280400 Sobic005G164500--Sobic004G027000 Sobic005G164500--Sobic004G117800 Sobic007G013300 Sobic007G013300 Sobic005G164500--Sobic007G013300 Sobic010G085200 Sobic010G085200 Sobic005G164500--Sobic010G085200 Sobic002G394800 Sobic002G394800 Sobic005G164500--Sobic002G394800 Sobic001G469200 Sobic001G469200 Sobic005G164500--Sobic001G469200 Sobic002G058700 Sobic002G058700 Sobic005G164500--Sobic002G058700 Sobic001G426100 Sobic001G426100 Sobic005G164500--Sobic001G426100
Octagon: transcription factors


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