Gene annotation
Transcriptome id Sobic.009G201200.1
Synonym PWP2, ATPWP2, Sb09g025880
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5Z1B2
Pfam PF04003 PF00400
Panther DB PTHR19858
NCBI CDD -
KEGG Orthology K14558; PWP2, periodic tryptophan protein 2
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G15440 : periodic tryptophan protein 2
RAP-DB (Rice) LOC_Os05g44320.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044333
Brachypodium KQK05347
Barley HORVU1Hr1G086380.6 , HORVU1Hr1G086380.7 , HORVU1Hr1G086380.4 , HORVU1Hr1G086380.5 , HORVU1Hr1G086380.2 , HORVU1Hr1G086380.3 , HORVU1Hr1G086380.1
Wheat TraesCS1B02G352300 , TraesCS1D02G342000 , TraesCS1A02G340000
Populus PNT55103 , PNT43908


JBrowse

Open New Page


cDNA sequences
Sobic.009G201200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G050400 methyltransferase-like protein 5, putative, expressed -
2 Sobic.006G125700 kelch repeat protein, putative, expressed -
3 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
4 Sobic.004G157400 WD domain, G-beta repeat domain containing protein, expressed K14768: UTP7, U3 small nucleolar RNA-associated protein 7
5 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
6 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
7 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
8 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
9 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
10 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
11 Sobic.007G155700 - K14810: DDX56, ATP-dependent RNA helicase DDX56/DBP9
12 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
13 Sobic.007G217100 sas10/Utp3 family protein, expressed K14767: UTP3, U3 small nucleolar RNA-associated protein 3
14 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
15 Sobic.009G050100 ATKINESIN-13A/KINESIN-13A, putative, expressed K11091: U1 small nuclear ribonucleoprotein A
16 Sobic.003G058800 - K14809: DDX55, ATP-dependent RNA helicase DDX55/SPB4
17 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
18 Sobic.005G017100 pentatricopeptide, putative, expressed -
19 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
20 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10


Gene co-expression network
sample Sobic009G201200 Sobic009G201200 Sobic010G050400 Sobic010G050400 Sobic009G201200--Sobic010G050400 Sobic006G125700 Sobic006G125700 Sobic009G201200--Sobic006G125700 Sobic010G205900 Sobic010G205900 Sobic009G201200--Sobic010G205900 Sobic004G157400 Sobic004G157400 Sobic009G201200--Sobic004G157400 Sobic008G049100 Sobic008G049100 Sobic009G201200--Sobic008G049100 Sobic002G234300 Sobic002G234300 Sobic009G201200--Sobic002G234300 Sobic003G199300 Sobic003G199300 Sobic009G201200--Sobic003G199300 Sobic003G123200 Sobic003G123200 Sobic009G201200--Sobic003G123200 Sobic002G071400 Sobic002G071400 Sobic009G201200--Sobic002G071400 Sobic005G164500 Sobic005G164500 Sobic010G050400--Sobic005G164500 Sobic010G050400--Sobic009G201200 Sobic001G460500 Sobic001G460500 Sobic010G050400--Sobic001G460500 Sobic008G191500 Sobic008G191500 Sobic010G050400--Sobic008G191500 Sobic004G075200 Sobic004G075200 Sobic010G050400--Sobic004G075200 Sobic005G108801 Sobic005G108801 Sobic010G050400--Sobic005G108801 Sobic003G259600 Sobic003G259600 Sobic010G050400--Sobic003G259600 Sobic003G039500 Sobic003G039500 Sobic010G050400--Sobic003G039500 Sobic002G270100 Sobic002G270100 Sobic010G050400--Sobic002G270100 Sobic001G173800 Sobic001G173800 Sobic006G125700--Sobic001G173800 Sobic004G039900 Sobic004G039900 Sobic006G125700--Sobic004G039900 Sobic005G000300 Sobic005G000300 Sobic006G125700--Sobic005G000300 Sobic005G098800 Sobic005G098800 Sobic006G125700--Sobic005G098800 Sobic006G125700--Sobic009G201200 Sobic009G246500 Sobic009G246500 Sobic006G125700--Sobic009G246500 Sobic007G069700 Sobic007G069700 Sobic006G125700--Sobic007G069700 Sobic006G125700--Sobic003G123200 Sobic006G095400 Sobic006G095400 Sobic006G125700--Sobic006G095400 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic005G028100 Sobic005G028100 Sobic010G205900--Sobic005G028100 Sobic010G205900--Sobic002G071400 Sobic010G205900--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic010G205900--Sobic008G163500 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic007G217100 Sobic007G217100 Sobic004G157400--Sobic007G217100 Sobic003G221600 Sobic003G221600 Sobic004G157400--Sobic003G221600 Sobic001G524400 Sobic001G524400 Sobic004G157400--Sobic001G524400 Sobic009G143800 Sobic009G143800 Sobic004G157400--Sobic009G143800 Sobic001G177100 Sobic001G177100 Sobic004G157400--Sobic001G177100 Sobic001G098400 Sobic001G098400 Sobic004G157400--Sobic001G098400 Sobic004G157400--Sobic008G163500 Sobic009G101200 Sobic009G101200 Sobic004G157400--Sobic009G101200 Sobic003G382500 Sobic003G382500 Sobic004G157400--Sobic003G382500 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic002G234300--Sobic002G071400 Sobic004G256000 Sobic004G256000 Sobic002G234300--Sobic004G256000 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic009G217200 Sobic009G217200 Sobic002G234300--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic002G234300--Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic002G234300--Sobic010G003400 Sobic002G234300--Sobic009G246500 Sobic002G234300--Sobic003G199300 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic004G085000 Sobic004G085000 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G071400--Sobic002G234300 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic006G221600 Sobic006G221600 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic002G071400--Sobic003G123200 Sobic002G071400--Sobic004G085000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.