Gene annotation
Transcriptome id Sobic.003G058800.1
Synonym Sb03g005040
Functional annotation -
UniProt C5XNL5
Pfam PF04851 PF13959 PF00271
Panther DB PTHR24031 PTHR24031:SF2
NCBI CDD -
KEGG Orthology K14809; DDX55, ATP-dependent RNA helicase DDX55/SPB4
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G05450 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g07080.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a049349 , Zm00025a023338 , Zm00025a045504 , Zm00025a048666
Brachypodium KQK02826
Barley HORVU3Hr1G018130.8 , HORVU3Hr1G018130.9 , HORVU3Hr1G018130.4 , HORVU3Hr1G018130.5 , HORVU3Hr1G018130.6 , HORVU3Hr1G018130.7 , HORVU3Hr1G018130.1 , HORVU3Hr1G018130.2 , HORVU3Hr1G018130.10
Wheat TraesCS3B02G116900 , TraesCS3A02G100100 , TraesCS3D02G100800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
2 Sobic.002G318800 - K14776: DDX10, ATP-dependent RNA helicase DDX10/DBP4
3 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
4 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
5 Sobic.006G143200 - K14805: DDX24, ATP-dependent RNA helicase DDX24/MAK5
6 Sobic.001G450000 nucleoporin, putative, expressed K14300: nuclear pore complex protein Nup133
7 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
8 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
9 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
10 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
11 Sobic.006G128400 PPR repeat containing protein, expressed -
12 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
13 Sobic.007G217100 sas10/Utp3 family protein, expressed K14767: UTP3, U3 small nucleolar RNA-associated protein 3
14 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
15 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
16 Sobic.004G224600 expressed protein -
17 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
18 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
19 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
20 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -


Gene co-expression network
sample Sobic003G058800 Sobic003G058800 Sobic008G049100 Sobic008G049100 Sobic003G058800--Sobic008G049100 Sobic002G318800 Sobic002G318800 Sobic003G058800--Sobic002G318800 Sobic009G246500 Sobic009G246500 Sobic003G058800--Sobic009G246500 Sobic002G234300 Sobic002G234300 Sobic003G058800--Sobic002G234300 Sobic006G143200 Sobic006G143200 Sobic003G058800--Sobic006G143200 Sobic001G450000 Sobic001G450000 Sobic003G058800--Sobic001G450000 Sobic001G173800 Sobic001G173800 Sobic003G058800--Sobic001G173800 Sobic010G003400 Sobic010G003400 Sobic003G058800--Sobic010G003400 Sobic001G501400 Sobic001G501400 Sobic003G058800--Sobic001G501400 Sobic010G205900 Sobic010G205900 Sobic008G049100--Sobic010G205900 Sobic002G071400 Sobic002G071400 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic008G049100--Sobic003G199300 Sobic003G123200 Sobic003G123200 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic001G239800 Sobic001G239800 Sobic002G318800--Sobic001G239800 Sobic002G318800--Sobic001G450000 Sobic007G097400 Sobic007G097400 Sobic002G318800--Sobic007G097400 Sobic007G075800 Sobic007G075800 Sobic002G318800--Sobic007G075800 Sobic003G209400 Sobic003G209400 Sobic002G318800--Sobic003G209400 Sobic006G125900 Sobic006G125900 Sobic002G318800--Sobic006G125900 Sobic008G051200 Sobic008G051200 Sobic002G318800--Sobic008G051200 Sobic007G201700 Sobic007G201700 Sobic002G318800--Sobic007G201700 Sobic002G112600 Sobic002G112600 Sobic002G318800--Sobic002G112600 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic002G234300--Sobic002G071400 Sobic004G256000 Sobic004G256000 Sobic002G234300--Sobic004G256000 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic009G217200 Sobic009G217200 Sobic002G234300--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic002G234300--Sobic001G453400 Sobic002G234300--Sobic010G003400 Sobic002G234300--Sobic009G246500 Sobic002G234300--Sobic003G199300 Sobic004G030600 Sobic004G030600 Sobic006G143200--Sobic004G030600 Sobic006G143200--Sobic001G173800 Sobic003G432300 Sobic003G432300 Sobic006G143200--Sobic003G432300 Sobic006G095400 Sobic006G095400 Sobic006G143200--Sobic006G095400 Sobic001G203500 Sobic001G203500 Sobic006G143200--Sobic001G203500 Sobic010G038800 Sobic010G038800 Sobic006G143200--Sobic010G038800 Sobic001G206500 Sobic001G206500 Sobic006G143200--Sobic001G206500 Sobic009G173600 Sobic009G173600 Sobic006G143200--Sobic009G173600 Sobic006G181800 Sobic006G181800 Sobic006G143200--Sobic006G181800 Sobic003G375200 Sobic003G375200 Sobic001G450000--Sobic003G375200 Sobic001G450000--Sobic002G318800 Sobic001G450000--Sobic007G097400 Sobic001G020000 Sobic001G020000 Sobic001G450000--Sobic001G020000 Sobic002G412700 Sobic002G412700 Sobic001G450000--Sobic002G412700 Sobic006G029100 Sobic006G029100 Sobic001G450000--Sobic006G029100 Sobic010G080700 Sobic010G080700 Sobic001G450000--Sobic010G080700 Sobic001G451300 Sobic001G451300 Sobic001G450000--Sobic001G451300 Sobic006G047900 Sobic006G047900 Sobic001G450000--Sobic006G047900 Sobic001G382500 Sobic001G382500 Sobic001G173800--Sobic001G382500 Sobic001G173800--Sobic001G501400 Sobic001G173800--Sobic008G163500 Sobic001G173800--Sobic008G049100 Sobic001G173800--Sobic009G173600 Sobic009G235200 Sobic009G235200 Sobic001G173800--Sobic009G235200 Sobic003G156500 Sobic003G156500 Sobic001G173800--Sobic003G156500 Sobic001G173800--Sobic009G246500 Sobic005G000300 Sobic005G000300 Sobic001G173800--Sobic005G000300 Sobic006G086600 Sobic006G086600 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic001G358600 Sobic001G358600 Sobic001G501400--Sobic001G358600 Sobic006G128400 Sobic006G128400 Sobic001G501400--Sobic006G128400 Sobic001G501400--Sobic003G156500 Sobic001G501400--Sobic001G173800 Sobic001G501400--Sobic006G125900 Sobic001G501400--Sobic008G049100 Sobic001G501400--Sobic010G003400 Sobic002G378100 Sobic002G378100 Sobic001G501400--Sobic002G378100 Sobic001G501400--Sobic006G193300
Octagon: transcription factors


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