Gene annotation
Transcriptome id Sobic.006G125700.1
Synonym Sb06g020590
Functional annotation kelch repeat protein, putative, expressed
UniProt A0A1B6PLN4
Pfam PF13422 PF13964 PF13418 PF13415
Panther DB PTHR23244 PTHR23244:SF304
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50310 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os04g40740.1 : kelch repeat protein, putative, expressed
MaizeGDB (Corn) Zm00025a010961
Brachypodium KQJ83223 , KQJ83224
Barley HORVU2Hr1G083780.19 , HORVU2Hr1G083780.6 , HORVU2Hr1G083780.7 , HORVU2Hr1G083780.4 , HORVU2Hr1G083780.5 , HORVU2Hr1G083780.2 , HORVU2Hr1G083780.3 , HORVU2Hr1G083780.1 , HORVU2Hr1G083780.8 , HORVU2Hr1G083780.9 , HORVU2Hr1G083780.18 , HORVU2Hr1G083780.14 , HORVU2Hr1G083780.15 , HORVU2Hr1G083780.16 , HORVU2Hr1G083780.17 , HORVU2Hr1G083780.10 , HORVU2Hr1G083780.11 , HORVU2Hr1G083780.12 , HORVU2Hr1G083780.13
Wheat TraesCS2B02G361300 , TraesCS2D02G342300 , TraesCS2D02G342300 , TraesCS2A02G321200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G125700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
2 Sobic.004G039900 expressed protein -
3 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
4 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
5 Sobic.009G201200 WD domain, G-beta repeat domain containing protein, expressed K14558: PWP2, periodic tryptophan protein 2
6 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
7 Sobic.007G069700 gar2, putative, expressed K11294: NCL, nucleolin
8 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
9 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
10 Sobic.009G173600 expressed protein K14572: MDN1, midasin
11 Sobic.002G423400 PPR repeat containing protein, expressed -
12 Sobic.006G143200 - K14805: DDX24, ATP-dependent RNA helicase DDX24/MAK5
13 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
14 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
15 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
16 Sobic.001G382500 AARP2CN domain containing protein, expressed K14569: ribosome biogenesis protein BMS1
17 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
18 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
19 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
20 Sobic.010G003900 arginine N-methyltransferase 7, putative, expressed K11438: type III protein arginine methyltransferase


Gene co-expression network
sample Sobic006G125700 Sobic006G125700 Sobic001G173800 Sobic001G173800 Sobic006G125700--Sobic001G173800 Sobic004G039900 Sobic004G039900 Sobic006G125700--Sobic004G039900 Sobic005G000300 Sobic005G000300 Sobic006G125700--Sobic005G000300 Sobic005G098800 Sobic005G098800 Sobic006G125700--Sobic005G098800 Sobic009G201200 Sobic009G201200 Sobic006G125700--Sobic009G201200 Sobic009G246500 Sobic009G246500 Sobic006G125700--Sobic009G246500 Sobic007G069700 Sobic007G069700 Sobic006G125700--Sobic007G069700 Sobic003G123200 Sobic003G123200 Sobic006G125700--Sobic003G123200 Sobic006G095400 Sobic006G095400 Sobic006G125700--Sobic006G095400 Sobic001G382500 Sobic001G382500 Sobic001G173800--Sobic001G382500 Sobic001G501400 Sobic001G501400 Sobic001G173800--Sobic001G501400 Sobic008G163500 Sobic008G163500 Sobic001G173800--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G173800--Sobic008G049100 Sobic009G173600 Sobic009G173600 Sobic001G173800--Sobic009G173600 Sobic009G235200 Sobic009G235200 Sobic001G173800--Sobic009G235200 Sobic003G156500 Sobic003G156500 Sobic001G173800--Sobic003G156500 Sobic001G173800--Sobic009G246500 Sobic001G173800--Sobic005G000300 Sobic004G039900--Sobic006G125700 Sobic004G039900--Sobic005G000300 Sobic004G039900--Sobic001G173800 Sobic001G039300 Sobic001G039300 Sobic004G039900--Sobic001G039300 Sobic001G088900 Sobic001G088900 Sobic004G039900--Sobic001G088900 Sobic002G154400 Sobic002G154400 Sobic004G039900--Sobic002G154400 Sobic009G032200 Sobic009G032200 Sobic004G039900--Sobic009G032200 Sobic007G014800 Sobic007G014800 Sobic004G039900--Sobic007G014800 Sobic004G039900--Sobic006G095400 Sobic002G112600 Sobic002G112600 Sobic005G000300--Sobic002G112600 Sobic004G031300 Sobic004G031300 Sobic005G000300--Sobic004G031300 Sobic010G091500 Sobic010G091500 Sobic005G000300--Sobic010G091500 Sobic005G000300--Sobic003G123200 Sobic010G224700 Sobic010G224700 Sobic005G000300--Sobic010G224700 Sobic001G334100 Sobic001G334100 Sobic005G000300--Sobic001G334100 Sobic005G000300--Sobic009G246500 Sobic002G378100 Sobic002G378100 Sobic005G000300--Sobic002G378100 Sobic005G000300--Sobic008G163500 Sobic005G098800--Sobic003G123200 Sobic005G098800--Sobic008G049100 Sobic010G205900 Sobic010G205900 Sobic005G098800--Sobic010G205900 Sobic005G098800--Sobic009G246500 Sobic005G098800--Sobic008G163500 Sobic002G423400 Sobic002G423400 Sobic005G098800--Sobic002G423400 Sobic005G028100 Sobic005G028100 Sobic005G098800--Sobic005G028100 Sobic005G098800--Sobic010G224700 Sobic004G215900 Sobic004G215900 Sobic005G098800--Sobic004G215900 Sobic010G050400 Sobic010G050400 Sobic009G201200--Sobic010G050400 Sobic009G201200--Sobic006G125700 Sobic009G201200--Sobic010G205900 Sobic004G157400 Sobic004G157400 Sobic009G201200--Sobic004G157400 Sobic009G201200--Sobic008G049100 Sobic002G234300 Sobic002G234300 Sobic009G201200--Sobic002G234300 Sobic003G199300 Sobic003G199300 Sobic009G201200--Sobic003G199300 Sobic009G201200--Sobic003G123200 Sobic002G071400 Sobic002G071400 Sobic009G201200--Sobic002G071400 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic002G126800 Sobic002G126800 Sobic007G069700--Sobic002G126800 Sobic003G432300 Sobic003G432300 Sobic007G069700--Sobic003G432300 Sobic007G069700--Sobic005G028100 Sobic002G132600 Sobic002G132600 Sobic007G069700--Sobic002G132600 Sobic010G038800 Sobic010G038800 Sobic007G069700--Sobic010G038800 Sobic001G373000 Sobic001G373000 Sobic007G069700--Sobic001G373000 Sobic009G253400 Sobic009G253400 Sobic007G069700--Sobic009G253400 Sobic004G038100 Sobic004G038100 Sobic007G069700--Sobic004G038100 Sobic001G097400 Sobic001G097400 Sobic007G069700--Sobic001G097400 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic006G095400--Sobic001G173800 Sobic009G228500 Sobic009G228500 Sobic006G095400--Sobic009G228500 Sobic002G312800 Sobic002G312800 Sobic006G095400--Sobic002G312800 Sobic002G300500 Sobic002G300500 Sobic006G095400--Sobic002G300500 Sobic006G143200 Sobic006G143200 Sobic006G095400--Sobic006G143200 Sobic006G095400--Sobic009G235200 Sobic001G206500 Sobic001G206500 Sobic006G095400--Sobic001G206500 Sobic006G095400--Sobic008G163500 Sobic001G466600 Sobic001G466600 Sobic006G095400--Sobic001G466600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.