Gene annotation
Transcriptome id Sobic.004G039900.2,Sobic.004G039900.1
Synonym BIN4, Sb04g003440
Functional annotation expressed protein
UniProt A0A194YNP4 , A0A194YMQ1
Pfam -
Panther DB PTHR34810 PTHR34810:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24630 : double-stranded DNA binding
RAP-DB (Rice) LOC_Os02g05440.1 : expressed protein
MaizeGDB (Corn) Zm00025a018978
Brachypodium PNT65867 , KQJ93301
Barley HORVU6Hr1G021170.1 , HORVU6Hr1G021170.3 , HORVU6Hr1G021170.2 , HORVU6Hr1G021170.5 , HORVU6Hr1G021170.4
Wheat TraesCS6D02G106700 , TraesCS6A02G117100 , TraesCS6B02G144800
Populus PNT08740 , PNT08741 , PNT08735 , PNT08743 , PNT08742 , PNT08736


JBrowse

Open New Page


cDNA sequences
Sobic.004G039900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G125700 kelch repeat protein, putative, expressed -
2 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
3 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
4 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
5 Sobic.001G088900 serine/threonine-protein kinase TOUSLED, putative, expressed K08864: tousled-like kinase
6 Sobic.002G154400 MIM, putative, expressed -
7 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
8 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
9 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
10 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
11 Sobic.009G208200 WD repeat-containing protein 55, putative, expressed -
12 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
13 Sobic.006G154100 mRNA cap guanine-N7 methyltransferase 2, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
14 Sobic.006G013100 expressed protein K13205: AAR2, A1 cistron-splicing factor AAR2
15 Sobic.002G395700 DNA repair protein RAD51 homolog 4, putative, expressed K10871: RAD51L3, RAD51-like protein 3
16 Sobic.001G135300 expressed protein -
17 Sobic.004G020100 division protein, putative, expressed -
18 Sobic.007G069700 gar2, putative, expressed K11294: NCL, nucleolin
19 Sobic.010G233000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.007G162500 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT


Gene co-expression network
sample Sobic004G039900 Sobic004G039900 Sobic006G125700 Sobic006G125700 Sobic004G039900--Sobic006G125700 Sobic005G000300 Sobic005G000300 Sobic004G039900--Sobic005G000300 Sobic001G173800 Sobic001G173800 Sobic004G039900--Sobic001G173800 Sobic001G039300 Sobic001G039300 Sobic004G039900--Sobic001G039300 Sobic001G088900 Sobic001G088900 Sobic004G039900--Sobic001G088900 Sobic002G154400 Sobic002G154400 Sobic004G039900--Sobic002G154400 Sobic009G032200 Sobic009G032200 Sobic004G039900--Sobic009G032200 Sobic007G014800 Sobic007G014800 Sobic004G039900--Sobic007G014800 Sobic006G095400 Sobic006G095400 Sobic004G039900--Sobic006G095400 Sobic006G125700--Sobic001G173800 Sobic006G125700--Sobic004G039900 Sobic006G125700--Sobic005G000300 Sobic005G098800 Sobic005G098800 Sobic006G125700--Sobic005G098800 Sobic009G201200 Sobic009G201200 Sobic006G125700--Sobic009G201200 Sobic009G246500 Sobic009G246500 Sobic006G125700--Sobic009G246500 Sobic007G069700 Sobic007G069700 Sobic006G125700--Sobic007G069700 Sobic003G123200 Sobic003G123200 Sobic006G125700--Sobic003G123200 Sobic006G125700--Sobic006G095400 Sobic002G112600 Sobic002G112600 Sobic005G000300--Sobic002G112600 Sobic004G031300 Sobic004G031300 Sobic005G000300--Sobic004G031300 Sobic010G091500 Sobic010G091500 Sobic005G000300--Sobic010G091500 Sobic005G000300--Sobic003G123200 Sobic010G224700 Sobic010G224700 Sobic005G000300--Sobic010G224700 Sobic001G334100 Sobic001G334100 Sobic005G000300--Sobic001G334100 Sobic005G000300--Sobic009G246500 Sobic002G378100 Sobic002G378100 Sobic005G000300--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic005G000300--Sobic008G163500 Sobic001G382500 Sobic001G382500 Sobic001G173800--Sobic001G382500 Sobic001G501400 Sobic001G501400 Sobic001G173800--Sobic001G501400 Sobic001G173800--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G173800--Sobic008G049100 Sobic009G173600 Sobic009G173600 Sobic001G173800--Sobic009G173600 Sobic009G235200 Sobic009G235200 Sobic001G173800--Sobic009G235200 Sobic003G156500 Sobic003G156500 Sobic001G173800--Sobic003G156500 Sobic001G173800--Sobic009G246500 Sobic001G173800--Sobic005G000300 Sobic009G105400 Sobic009G105400 Sobic001G039300--Sobic009G105400 Sobic001G039300--Sobic004G031300 Sobic005G120700 Sobic005G120700 Sobic001G039300--Sobic005G120700 Sobic001G024000 Sobic001G024000 Sobic001G039300--Sobic001G024000 Sobic006G059500 Sobic006G059500 Sobic001G039300--Sobic006G059500 Sobic006G140400 Sobic006G140400 Sobic001G039300--Sobic006G140400 Sobic010G269300 Sobic010G269300 Sobic001G039300--Sobic010G269300 Sobic010G172400 Sobic010G172400 Sobic001G039300--Sobic010G172400 Sobic001G039300--Sobic009G032200 Sobic010G279900 Sobic010G279900 Sobic001G088900--Sobic010G279900 Sobic001G245900 Sobic001G245900 Sobic001G088900--Sobic001G245900 Sobic001G367100 Sobic001G367100 Sobic001G088900--Sobic001G367100 Sobic006G180700 Sobic006G180700 Sobic001G088900--Sobic006G180700 Sobic009G000400 Sobic009G000400 Sobic001G088900--Sobic009G000400 Sobic001G034500 Sobic001G034500 Sobic001G088900--Sobic001G034500 Sobic001G088900--Sobic010G269300 Sobic001G222000 Sobic001G222000 Sobic001G088900--Sobic001G222000 Sobic001G261585 Sobic001G261585 Sobic001G088900--Sobic001G261585 Sobic009G042100 Sobic009G042100 Sobic002G154400--Sobic009G042100 Sobic007G039300 Sobic007G039300 Sobic002G154400--Sobic007G039300 Sobic007G053700 Sobic007G053700 Sobic002G154400--Sobic007G053700 Sobic003G349000 Sobic003G349000 Sobic002G154400--Sobic003G349000 Sobic010G240800 Sobic010G240800 Sobic002G154400--Sobic010G240800 Sobic004G020900 Sobic004G020900 Sobic002G154400--Sobic004G020900 Sobic002G154400--Sobic009G032200 Sobic008G017900 Sobic008G017900 Sobic002G154400--Sobic008G017900 Sobic009G069200 Sobic009G069200 Sobic002G154400--Sobic009G069200 Sobic010G236200 Sobic010G236200 Sobic009G032200--Sobic010G236200 Sobic010G233000 Sobic010G233000 Sobic009G032200--Sobic010G233000 Sobic009G032200--Sobic010G269300 Sobic004G043750 Sobic004G043750 Sobic009G032200--Sobic004G043750 Sobic008G057000 Sobic008G057000 Sobic009G032200--Sobic008G057000 Sobic009G257500 Sobic009G257500 Sobic009G032200--Sobic009G257500 Sobic003G221500 Sobic003G221500 Sobic009G032200--Sobic003G221500 Sobic010G215900 Sobic010G215900 Sobic009G032200--Sobic010G215900 Sobic001G135500 Sobic001G135500 Sobic009G032200--Sobic001G135500 Sobic003G123100 Sobic003G123100 Sobic007G014800--Sobic003G123100 Sobic009G142000 Sobic009G142000 Sobic007G014800--Sobic009G142000 Sobic004G086200 Sobic004G086200 Sobic007G014800--Sobic004G086200 Sobic007G014800--Sobic002G112600 Sobic001G346900 Sobic001G346900 Sobic007G014800--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic007G014800--Sobic004G285000 Sobic004G215900 Sobic004G215900 Sobic007G014800--Sobic004G215900 Sobic006G226300 Sobic006G226300 Sobic007G014800--Sobic006G226300 Sobic007G014800--Sobic008G163500 Sobic006G095400--Sobic001G173800 Sobic009G228500 Sobic009G228500 Sobic006G095400--Sobic009G228500 Sobic002G312800 Sobic002G312800 Sobic006G095400--Sobic002G312800 Sobic002G300500 Sobic002G300500 Sobic006G095400--Sobic002G300500 Sobic006G143200 Sobic006G143200 Sobic006G095400--Sobic006G143200 Sobic006G095400--Sobic009G235200 Sobic001G206500 Sobic001G206500 Sobic006G095400--Sobic001G206500 Sobic006G095400--Sobic008G163500 Sobic001G466600 Sobic001G466600 Sobic006G095400--Sobic001G466600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.