Gene annotation
Transcriptome id Sobic.004G157400.1
Synonym Sb04g021020
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XSP0
Pfam PF08149
Panther DB PTHR14085 PTHR14085:SF3
NCBI CDD -
KEGG Orthology K14768; UTP7, U3 small nucleolar RNA-associated protein 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10530 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g08770.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a041694
Brachypodium KQK14115 , KQK12519 , KQK12520
Barley HORVU4Hr1G011790.16 , HORVU4Hr1G011790.17 , HORVU4Hr1G011790.14 , HORVU4Hr1G011790.15 , HORVU4Hr1G011790.12 , HORVU4Hr1G011790.13 , HORVU4Hr1G011790.10 , HORVU4Hr1G011790.11 , HORVU4Hr1G011790.18 , HORVU4Hr1G011790.19 , HORVU2Hr1G124260.11 , HORVU2Hr1G124260.10 , HORVU2Hr1G124260.13 , HORVU2Hr1G124260.12 , HORVU2Hr1G124260.15 , HORVU2Hr1G124260.14 , HORVU2Hr1G124260.5 , HORVU2Hr1G124260.4 , HORVU2Hr1G124260.7 , HORVU2Hr1G124260.6 , HORVU2Hr1G124260.1 , HORVU2Hr1G124260.3 , HORVU2Hr1G124260.2 , HORVU2Hr1G124260.9 , HORVU2Hr1G124260.8 , HORVU4Hr1G011790.22 , HORVU4Hr1G011790.21 , HORVU4Hr1G011790.4 , HORVU4Hr1G011790.5 , HORVU4Hr1G011790.6 , HORVU4Hr1G011790.7 , HORVU4Hr1G011790.1 , HORVU4Hr1G011790.2 , HORVU4Hr1G011790.3 , HORVU4Hr1G011790.8 , HORVU4Hr1G011790.9 , HORVU2Hr1G046230.3 , HORVU2Hr1G046230.4
Wheat TraesCS4D02G069800 , TraesCS4B02G070900 , TraesCS4A02G244000 , TraesCS4A02G244000
Populus -


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cDNA sequences
Sobic.004G157400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G217100 sas10/Utp3 family protein, expressed K14767: UTP3, U3 small nucleolar RNA-associated protein 3
2 Sobic.003G221600 expressed protein -
3 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
4 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
5 Sobic.001G177100 GTPase of unknown function domain containing protein, putative, expressed K14538: NUG1, nuclear GTP-binding protein
6 Sobic.001G098400 expressed protein K16278: E3 ubiquitin-protein ligase HOS1
7 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
8 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
9 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
10 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
11 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
12 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.009G046700 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
14 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
15 Sobic.002G105101 - -
16 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
17 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
18 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
19 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
20 Sobic.003G300300 la domain containing protein, expressed K15191: La-related protein 7


Gene co-expression network
sample Sobic004G157400 Sobic004G157400 Sobic007G217100 Sobic007G217100 Sobic004G157400--Sobic007G217100 Sobic003G221600 Sobic003G221600 Sobic004G157400--Sobic003G221600 Sobic001G524400 Sobic001G524400 Sobic004G157400--Sobic001G524400 Sobic009G143800 Sobic009G143800 Sobic004G157400--Sobic009G143800 Sobic001G177100 Sobic001G177100 Sobic004G157400--Sobic001G177100 Sobic001G098400 Sobic001G098400 Sobic004G157400--Sobic001G098400 Sobic008G163500 Sobic008G163500 Sobic004G157400--Sobic008G163500 Sobic009G101200 Sobic009G101200 Sobic004G157400--Sobic009G101200 Sobic003G382500 Sobic003G382500 Sobic004G157400--Sobic003G382500 Sobic001G052400 Sobic001G052400 Sobic007G217100--Sobic001G052400 Sobic002G105101 Sobic002G105101 Sobic007G217100--Sobic002G105101 Sobic006G125900 Sobic006G125900 Sobic007G217100--Sobic006G125900 Sobic003G042400 Sobic003G042400 Sobic007G217100--Sobic003G042400 Sobic004G321700 Sobic004G321700 Sobic007G217100--Sobic004G321700 Sobic001G453400 Sobic001G453400 Sobic007G217100--Sobic001G453400 Sobic007G217100--Sobic009G101200 Sobic004G224600 Sobic004G224600 Sobic007G217100--Sobic004G224600 Sobic007G217100--Sobic008G163500 Sobic001G081000 Sobic001G081000 Sobic003G221600--Sobic001G081000 Sobic003G258900 Sobic003G258900 Sobic003G221600--Sobic003G258900 Sobic008G078300 Sobic008G078300 Sobic003G221600--Sobic008G078300 Sobic009G145101 Sobic009G145101 Sobic003G221600--Sobic009G145101 Sobic005G157100 Sobic005G157100 Sobic003G221600--Sobic005G157100 Sobic007G220300 Sobic007G220300 Sobic003G221600--Sobic007G220300 Sobic008G131000 Sobic008G131000 Sobic003G221600--Sobic008G131000 Sobic003G267800 Sobic003G267800 Sobic003G221600--Sobic003G267800 Sobic006G226300 Sobic006G226300 Sobic003G221600--Sobic006G226300 Sobic004G307500 Sobic004G307500 Sobic001G524400--Sobic004G307500 Sobic010G203300 Sobic010G203300 Sobic001G524400--Sobic010G203300 Sobic006G135900 Sobic006G135900 Sobic001G524400--Sobic006G135900 Sobic007G039400 Sobic007G039400 Sobic001G524400--Sobic007G039400 Sobic003G300300 Sobic003G300300 Sobic001G524400--Sobic003G300300 Sobic008G103300 Sobic008G103300 Sobic001G524400--Sobic008G103300 Sobic003G188500 Sobic003G188500 Sobic001G524400--Sobic003G188500 Sobic009G138700 Sobic009G138700 Sobic001G524400--Sobic009G138700 Sobic004G346100 Sobic004G346100 Sobic001G524400--Sobic004G346100 Sobic004G353000 Sobic004G353000 Sobic009G143800--Sobic004G353000 Sobic001G259000 Sobic001G259000 Sobic009G143800--Sobic001G259000 Sobic004G332400 Sobic004G332400 Sobic009G143800--Sobic004G332400 Sobic008G014500 Sobic008G014500 Sobic009G143800--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic009G143800--Sobic010G118000 Sobic006G200700 Sobic006G200700 Sobic009G143800--Sobic006G200700 Sobic008G147200 Sobic008G147200 Sobic009G143800--Sobic008G147200 Sobic009G143800--Sobic008G131000 Sobic001G291800 Sobic001G291800 Sobic009G143800--Sobic001G291800 Sobic010G073200 Sobic010G073200 Sobic001G177100--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic001G177100--Sobic003G407600 Sobic001G401400 Sobic001G401400 Sobic001G177100--Sobic001G401400 Sobic002G344500 Sobic002G344500 Sobic001G177100--Sobic002G344500 Sobic001G177100--Sobic008G163500 Sobic004G036700 Sobic004G036700 Sobic001G177100--Sobic004G036700 Sobic001G126600 Sobic001G126600 Sobic001G177100--Sobic001G126600 Sobic001G177100--Sobic003G258900 Sobic001G177100--Sobic004G157400 Sobic003G308500 Sobic003G308500 Sobic001G098400--Sobic003G308500 Sobic006G125500 Sobic006G125500 Sobic001G098400--Sobic006G125500 Sobic002G252100 Sobic002G252100 Sobic001G098400--Sobic002G252100 Sobic002G371600 Sobic002G371600 Sobic001G098400--Sobic002G371600 Sobic001G346900 Sobic001G346900 Sobic001G098400--Sobic001G346900 Sobic003G309050 Sobic003G309050 Sobic001G098400--Sobic003G309050 Sobic001G004100 Sobic001G004100 Sobic001G098400--Sobic001G004100 Sobic004G006600 Sobic004G006600 Sobic001G098400--Sobic004G006600 Sobic003G433300 Sobic003G433300 Sobic001G098400--Sobic003G433300 Sobic005G028100 Sobic005G028100 Sobic008G163500--Sobic005G028100 Sobic003G123200 Sobic003G123200 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic010G205900 Sobic010G205900 Sobic008G163500--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic001G422500 Sobic001G422500 Sobic008G163500--Sobic001G422500 Sobic010G224700 Sobic010G224700 Sobic008G163500--Sobic010G224700 Sobic008G163500--Sobic004G036700 Sobic006G086600 Sobic006G086600 Sobic009G101200--Sobic006G086600 Sobic010G003400 Sobic010G003400 Sobic009G101200--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic009G101200--Sobic001G145400 Sobic009G101200--Sobic001G259000 Sobic004G085000 Sobic004G085000 Sobic009G101200--Sobic004G085000 Sobic009G101200--Sobic001G052400 Sobic009G101200--Sobic009G246500 Sobic001G429600 Sobic001G429600 Sobic009G101200--Sobic001G429600 Sobic006G049600 Sobic006G049600 Sobic009G101200--Sobic006G049600 Sobic003G382500--Sobic009G138700 Sobic008G098600 Sobic008G098600 Sobic003G382500--Sobic008G098600 Sobic006G084000 Sobic006G084000 Sobic003G382500--Sobic006G084000 Sobic003G382500--Sobic003G407600 Sobic001G017700 Sobic001G017700 Sobic003G382500--Sobic001G017700 Sobic003G287100 Sobic003G287100 Sobic003G382500--Sobic003G287100 Sobic007G112600 Sobic007G112600 Sobic003G382500--Sobic007G112600 Sobic010G007100 Sobic010G007100 Sobic003G382500--Sobic010G007100 Sobic008G009600 Sobic008G009600 Sobic003G382500--Sobic008G009600
Octagon: transcription factors


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