Gene annotation
Transcriptome id Sobic.001G177100.1
Synonym Sb01g015410
Functional annotation GTPase of unknown function domain containing protein, putative, expressed
UniProt C5WTC3
Pfam PF08701 PF01926
Panther DB PTHR11089:SF30 PTHR11089
NCBI CDD KOG2484; GTPase
KEGG Orthology K14538; NUG1, nuclear GTP-binding protein
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT3G07050 : GTP-binding family protein
RAP-DB (Rice) LOC_Os01g27730.1 : GTPase of unknown function domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007154 , Zm00025a017341 , Zm00025a021273
Brachypodium PNT78274 , KQK16975
Barley HORVU2Hr1G016650.2 , HORVU2Hr1G016650.3 , HORVU2Hr1G016650.1 , HORVU2Hr1G016650.6 , HORVU2Hr1G016650.4 , HORVU2Hr1G016650.5
Wheat TraesCS2A02G097800 , TraesCS2B02G113500 , TraesCS2D02G097200
Populus -


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cDNA sequences
Sobic.001G177100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G073200 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
2 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
3 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
4 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
5 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
6 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
7 Sobic.001G126600 BRCA1 C Terminus domain containing protein, expressed K14843: PES1, pescadillo
8 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
9 Sobic.004G157400 WD domain, G-beta repeat domain containing protein, expressed K14768: UTP7, U3 small nucleolar RNA-associated protein 7
10 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
11 Sobic.009G046700 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
12 Sobic.003G407800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
13 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -
14 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
15 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
16 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
17 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
18 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
19 Sobic.010G015700 pentatricopeptide, putative, expressed -
20 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2


Gene co-expression network
sample Sobic001G177100 Sobic001G177100 Sobic010G073200 Sobic010G073200 Sobic001G177100--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic001G177100--Sobic003G407600 Sobic001G401400 Sobic001G401400 Sobic001G177100--Sobic001G401400 Sobic002G344500 Sobic002G344500 Sobic001G177100--Sobic002G344500 Sobic008G163500 Sobic008G163500 Sobic001G177100--Sobic008G163500 Sobic004G036700 Sobic004G036700 Sobic001G177100--Sobic004G036700 Sobic001G126600 Sobic001G126600 Sobic001G177100--Sobic001G126600 Sobic003G258900 Sobic003G258900 Sobic001G177100--Sobic003G258900 Sobic004G157400 Sobic004G157400 Sobic001G177100--Sobic004G157400 Sobic008G009600 Sobic008G009600 Sobic010G073200--Sobic008G009600 Sobic010G073200--Sobic003G258900 Sobic010G073200--Sobic001G126600 Sobic009G046700 Sobic009G046700 Sobic010G073200--Sobic009G046700 Sobic010G073200--Sobic001G177100 Sobic009G040500 Sobic009G040500 Sobic010G073200--Sobic009G040500 Sobic010G073200--Sobic003G407600 Sobic001G507900 Sobic001G507900 Sobic010G073200--Sobic001G507900 Sobic006G226300 Sobic006G226300 Sobic010G073200--Sobic006G226300 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic001G401400--Sobic004G036700 Sobic006G198600 Sobic006G198600 Sobic001G401400--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic001G401400--Sobic003G407600 Sobic002G344500--Sobic003G322200 Sobic002G344500--Sobic001G322600 Sobic008G056900 Sobic008G056900 Sobic002G344500--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic002G344500--Sobic009G096100 Sobic002G344500--Sobic003G407600 Sobic002G344500--Sobic006G226300 Sobic002G344500--Sobic004G036700 Sobic002G344500--Sobic001G422500 Sobic008G152300 Sobic008G152300 Sobic002G344500--Sobic008G152300 Sobic008G163500--Sobic005G028100 Sobic003G123200 Sobic003G123200 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic010G205900 Sobic010G205900 Sobic008G163500--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic008G163500--Sobic001G422500 Sobic010G224700 Sobic010G224700 Sobic008G163500--Sobic010G224700 Sobic008G163500--Sobic004G036700 Sobic004G036700--Sobic005G028100 Sobic004G036700--Sobic001G401400 Sobic004G036700--Sobic001G422500 Sobic004G036700--Sobic006G225400 Sobic004G036700--Sobic008G163500 Sobic004G036700--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic004G036700--Sobic003G425100 Sobic004G036700--Sobic006G198600 Sobic004G036700--Sobic010G205900 Sobic001G126600--Sobic010G073200 Sobic001G126600--Sobic008G009600 Sobic004G326600 Sobic004G326600 Sobic001G126600--Sobic004G326600 Sobic001G126600--Sobic001G401400 Sobic002G014400 Sobic002G014400 Sobic001G126600--Sobic002G014400 Sobic001G091900 Sobic001G091900 Sobic001G126600--Sobic001G091900 Sobic001G126600--Sobic006G198600 Sobic001G126600--Sobic003G407600 Sobic001G126600--Sobic003G123200 Sobic002G396000 Sobic002G396000 Sobic003G258900--Sobic002G396000 Sobic002G158700 Sobic002G158700 Sobic003G258900--Sobic002G158700 Sobic003G267800 Sobic003G267800 Sobic003G258900--Sobic003G267800 Sobic006G102100 Sobic006G102100 Sobic003G258900--Sobic006G102100 Sobic001G081000 Sobic001G081000 Sobic003G258900--Sobic001G081000 Sobic003G258900--Sobic006G226300 Sobic003G442000 Sobic003G442000 Sobic003G258900--Sobic003G442000 Sobic009G225200 Sobic009G225200 Sobic003G258900--Sobic009G225200 Sobic003G258900--Sobic009G046700 Sobic007G217100 Sobic007G217100 Sobic004G157400--Sobic007G217100 Sobic003G221600 Sobic003G221600 Sobic004G157400--Sobic003G221600 Sobic001G524400 Sobic001G524400 Sobic004G157400--Sobic001G524400 Sobic009G143800 Sobic009G143800 Sobic004G157400--Sobic009G143800 Sobic004G157400--Sobic001G177100 Sobic001G098400 Sobic001G098400 Sobic004G157400--Sobic001G098400 Sobic004G157400--Sobic008G163500 Sobic009G101200 Sobic009G101200 Sobic004G157400--Sobic009G101200 Sobic004G157400--Sobic003G382500
Octagon: transcription factors


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