Gene annotation
Transcriptome id Sobic.010G073200.2,Sobic.010G073200.1
Synonym Sb10g006410
Functional annotation nucleolar GTP-binding protein 1, putative, expressed
UniProt A0A194YHT8 , A0A194YHV5
Pfam PF08155 PF06858 PF06858 PF08155
Panther DB PTHR11702:SF4 PTHR11702 PTHR11702 PTHR11702:SF4
NCBI CDD KOG1490; GTP-binding protein CRFG/NOG1 (ODN superfamily)
KEGG Orthology K06943; nucleolar GTP-binding protein
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G50920 : Nucleolar GTP-binding protein
RAP-DB (Rice) LOC_Os07g01920.1 : nucleolar GTP-binding protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a042442 , Zm00025a049676
Brachypodium KQK19153 , KQK19152
Barley HORVU7Hr1G033470.2 , HORVU7Hr1G033470.1
Wheat TraesCS7D02G160700 , TraesCS7A02G160000 , TraesCS5B02G336400 , TraesCS5A02G337600 , TraesCS5D02G342200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
2 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
3 Sobic.001G126600 BRCA1 C Terminus domain containing protein, expressed K14843: PES1, pescadillo
4 Sobic.009G046700 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
5 Sobic.001G177100 GTPase of unknown function domain containing protein, putative, expressed K14538: NUG1, nuclear GTP-binding protein
6 Sobic.009G040500 glioma tumor suppressor candidate region gene 2 protein, putative, expressed K14840: NOP53, nucleolar protein 53
7 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
8 Sobic.001G507900 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
9 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
10 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
11 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
12 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
13 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
14 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
15 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
16 Sobic.006G102100 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
17 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
18 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
19 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
20 Sobic.003G267800 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3


Gene co-expression network
sample Sobic010G073200 Sobic010G073200 Sobic008G009600 Sobic008G009600 Sobic010G073200--Sobic008G009600 Sobic003G258900 Sobic003G258900 Sobic010G073200--Sobic003G258900 Sobic001G126600 Sobic001G126600 Sobic010G073200--Sobic001G126600 Sobic009G046700 Sobic009G046700 Sobic010G073200--Sobic009G046700 Sobic001G177100 Sobic001G177100 Sobic010G073200--Sobic001G177100 Sobic009G040500 Sobic009G040500 Sobic010G073200--Sobic009G040500 Sobic003G407600 Sobic003G407600 Sobic010G073200--Sobic003G407600 Sobic001G507900 Sobic001G507900 Sobic010G073200--Sobic001G507900 Sobic006G226300 Sobic006G226300 Sobic010G073200--Sobic006G226300 Sobic006G049600 Sobic006G049600 Sobic008G009600--Sobic006G049600 Sobic004G011000 Sobic004G011000 Sobic008G009600--Sobic004G011000 Sobic001G017700 Sobic001G017700 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic008G009600--Sobic010G073200 Sobic008G009600--Sobic003G407600 Sobic001G145400 Sobic001G145400 Sobic008G009600--Sobic001G145400 Sobic009G101200 Sobic009G101200 Sobic008G009600--Sobic009G101200 Sobic008G009600--Sobic006G226300 Sobic002G396000 Sobic002G396000 Sobic003G258900--Sobic002G396000 Sobic002G158700 Sobic002G158700 Sobic003G258900--Sobic002G158700 Sobic003G267800 Sobic003G267800 Sobic003G258900--Sobic003G267800 Sobic006G102100 Sobic006G102100 Sobic003G258900--Sobic006G102100 Sobic001G081000 Sobic001G081000 Sobic003G258900--Sobic001G081000 Sobic003G258900--Sobic006G226300 Sobic003G442000 Sobic003G442000 Sobic003G258900--Sobic003G442000 Sobic009G225200 Sobic009G225200 Sobic003G258900--Sobic009G225200 Sobic003G258900--Sobic009G046700 Sobic001G126600--Sobic010G073200 Sobic001G126600--Sobic008G009600 Sobic004G326600 Sobic004G326600 Sobic001G126600--Sobic004G326600 Sobic001G401400 Sobic001G401400 Sobic001G126600--Sobic001G401400 Sobic002G014400 Sobic002G014400 Sobic001G126600--Sobic002G014400 Sobic001G091900 Sobic001G091900 Sobic001G126600--Sobic001G091900 Sobic006G198600 Sobic006G198600 Sobic001G126600--Sobic006G198600 Sobic001G126600--Sobic003G407600 Sobic003G123200 Sobic003G123200 Sobic001G126600--Sobic003G123200 Sobic009G046700--Sobic003G258900 Sobic008G098600 Sobic008G098600 Sobic009G046700--Sobic008G098600 Sobic009G046700--Sobic004G011000 Sobic009G046700--Sobic006G226300 Sobic009G046700--Sobic008G009600 Sobic006G194400 Sobic006G194400 Sobic009G046700--Sobic006G194400 Sobic009G046700--Sobic010G073200 Sobic009G046700--Sobic009G225200 Sobic009G046700--Sobic001G081000 Sobic001G177100--Sobic010G073200 Sobic001G177100--Sobic003G407600 Sobic001G177100--Sobic001G401400 Sobic002G344500 Sobic002G344500 Sobic001G177100--Sobic002G344500 Sobic008G163500 Sobic008G163500 Sobic001G177100--Sobic008G163500 Sobic004G036700 Sobic004G036700 Sobic001G177100--Sobic004G036700 Sobic001G177100--Sobic001G126600 Sobic001G177100--Sobic003G258900 Sobic004G157400 Sobic004G157400 Sobic001G177100--Sobic004G157400 Sobic009G040500--Sobic004G011000 Sobic001G370300 Sobic001G370300 Sobic009G040500--Sobic001G370300 Sobic009G211700 Sobic009G211700 Sobic009G040500--Sobic009G211700 Sobic002G177500 Sobic002G177500 Sobic009G040500--Sobic002G177500 Sobic002G399200 Sobic002G399200 Sobic009G040500--Sobic002G399200 Sobic009G040500--Sobic010G073200 Sobic009G040500--Sobic003G407600 Sobic009G040500--Sobic008G009600 Sobic003G198300 Sobic003G198300 Sobic009G040500--Sobic003G198300 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic009G213100 Sobic009G213100 Sobic001G507900--Sobic009G213100 Sobic001G138400 Sobic001G138400 Sobic001G507900--Sobic001G138400 Sobic001G226000 Sobic001G226000 Sobic001G507900--Sobic001G226000 Sobic009G040800 Sobic009G040800 Sobic001G507900--Sobic009G040800 Sobic004G232000 Sobic004G232000 Sobic001G507900--Sobic004G232000 Sobic002G127400 Sobic002G127400 Sobic001G507900--Sobic002G127400 Sobic010G278600 Sobic010G278600 Sobic001G507900--Sobic010G278600 Sobic001G335900 Sobic001G335900 Sobic001G507900--Sobic001G335900 Sobic001G393700 Sobic001G393700 Sobic001G507900--Sobic001G393700 Sobic002G142600 Sobic002G142600 Sobic006G226300--Sobic002G142600 Sobic001G346900 Sobic001G346900 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic003G042400 Sobic003G042400 Sobic006G226300--Sobic003G042400 Sobic004G285000 Sobic004G285000 Sobic006G226300--Sobic004G285000 Sobic008G147200 Sobic008G147200 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500
Octagon: transcription factors


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