Gene annotation
Transcriptome id Sobic.007G155700.1
Synonym Sb07g022960
Functional annotation -
UniProt C5YMA3
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF333
NCBI CDD -
KEGG Orthology K14810; DDX56, ATP-dependent RNA helicase DDX56/DBP9
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G34910 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g51900.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a016890
Brachypodium KQK13410
Barley HORVU4Hr1G009960.4 , HORVU4Hr1G009960.6 , HORVU4Hr1G009960.7 , HORVU4Hr1G009960.5 , HORVU4Hr1G009960.2 , HORVU4Hr1G009960.3 , HORVU4Hr1G009960.1
Wheat TraesCS4D02G058800 , TraesCS4D02G058800 , TraesCS4A02G255900 , TraesCS4B02G058900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G157400 WD domain, G-beta repeat domain containing protein, expressed K14768: UTP7, U3 small nucleolar RNA-associated protein 7
2 Sobic.001G214800 - K12824: TCERG1, transcription elongation regulator 1
3 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
4 Sobic.007G217100 sas10/Utp3 family protein, expressed K14767: UTP3, U3 small nucleolar RNA-associated protein 3
5 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
6 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
7 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3
8 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
9 Sobic.003G036400 - K03254: translation initiation factor 3 subunit A
10 Sobic.009G201200 WD domain, G-beta repeat domain containing protein, expressed K14558: PWP2, periodic tryptophan protein 2
11 Sobic.009G016400 RNA recognition motif containing protein, expressed -
12 Sobic.003G185400 - -
13 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
14 Sobic.002G279800 M phase phosphoprotein 10, putative, expressed K14559: U3 small nucleolar RNA-associated protein MPP10
15 Sobic.001G536400 THO complex subunit 1, putative, expressed K12878: THO complex subunit 1
16 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
17 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
18 Sobic.001G098400 expressed protein K16278: E3 ubiquitin-protein ligase HOS1
19 Sobic.003G112800 T-complex protein, putative, expressed K09494: T-complex protein 1 subunit beta
20 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase


Gene co-expression network
sample Sobic007G155700 Sobic007G155700 Sobic004G157400 Sobic004G157400 Sobic007G155700--Sobic004G157400 Sobic001G214800 Sobic001G214800 Sobic007G155700--Sobic001G214800 Sobic004G320500 Sobic004G320500 Sobic007G155700--Sobic004G320500 Sobic007G217100 Sobic007G217100 Sobic007G155700--Sobic007G217100 Sobic002G234300 Sobic002G234300 Sobic007G155700--Sobic002G234300 Sobic001G206500 Sobic001G206500 Sobic007G155700--Sobic001G206500 Sobic006G034500 Sobic006G034500 Sobic007G155700--Sobic006G034500 Sobic004G256000 Sobic004G256000 Sobic007G155700--Sobic004G256000 Sobic003G036400 Sobic003G036400 Sobic007G155700--Sobic003G036400 Sobic004G157400--Sobic007G217100 Sobic003G221600 Sobic003G221600 Sobic004G157400--Sobic003G221600 Sobic001G524400 Sobic001G524400 Sobic004G157400--Sobic001G524400 Sobic009G143800 Sobic009G143800 Sobic004G157400--Sobic009G143800 Sobic001G177100 Sobic001G177100 Sobic004G157400--Sobic001G177100 Sobic001G098400 Sobic001G098400 Sobic004G157400--Sobic001G098400 Sobic008G163500 Sobic008G163500 Sobic004G157400--Sobic008G163500 Sobic009G101200 Sobic009G101200 Sobic004G157400--Sobic009G101200 Sobic003G382500 Sobic003G382500 Sobic004G157400--Sobic003G382500 Sobic002G068100 Sobic002G068100 Sobic001G214800--Sobic002G068100 Sobic003G019000 Sobic003G019000 Sobic001G214800--Sobic003G019000 Sobic001G536400 Sobic001G536400 Sobic001G214800--Sobic001G536400 Sobic001G354600 Sobic001G354600 Sobic001G214800--Sobic001G354600 Sobic010G121500 Sobic010G121500 Sobic001G214800--Sobic010G121500 Sobic002G344000 Sobic002G344000 Sobic001G214800--Sobic002G344000 Sobic001G375300 Sobic001G375300 Sobic001G214800--Sobic001G375300 Sobic001G152100 Sobic001G152100 Sobic001G214800--Sobic001G152100 Sobic004G351600 Sobic004G351600 Sobic001G214800--Sobic004G351600 Sobic001G052400 Sobic001G052400 Sobic004G320500--Sobic001G052400 Sobic006G086600 Sobic006G086600 Sobic004G320500--Sobic006G086600 Sobic004G340400 Sobic004G340400 Sobic004G320500--Sobic004G340400 Sobic002G256700 Sobic002G256700 Sobic004G320500--Sobic002G256700 Sobic001G493700 Sobic001G493700 Sobic004G320500--Sobic001G493700 Sobic001G089600 Sobic001G089600 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic010G003400 Sobic010G003400 Sobic004G320500--Sobic010G003400 Sobic009G255600 Sobic009G255600 Sobic004G320500--Sobic009G255600 Sobic007G217100--Sobic001G052400 Sobic002G105101 Sobic002G105101 Sobic007G217100--Sobic002G105101 Sobic006G125900 Sobic006G125900 Sobic007G217100--Sobic006G125900 Sobic003G042400 Sobic003G042400 Sobic007G217100--Sobic003G042400 Sobic004G321700 Sobic004G321700 Sobic007G217100--Sobic004G321700 Sobic001G453400 Sobic001G453400 Sobic007G217100--Sobic001G453400 Sobic007G217100--Sobic009G101200 Sobic004G224600 Sobic004G224600 Sobic007G217100--Sobic004G224600 Sobic007G217100--Sobic008G163500 Sobic002G071400 Sobic002G071400 Sobic002G234300--Sobic002G071400 Sobic002G234300--Sobic004G256000 Sobic008G049100 Sobic008G049100 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic009G217200 Sobic009G217200 Sobic002G234300--Sobic009G217200 Sobic002G234300--Sobic001G453400 Sobic002G234300--Sobic010G003400 Sobic009G246500 Sobic009G246500 Sobic002G234300--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic002G234300--Sobic003G199300 Sobic009G042100 Sobic009G042100 Sobic001G206500--Sobic009G042100 Sobic001G455800 Sobic001G455800 Sobic001G206500--Sobic001G455800 Sobic003G004300 Sobic003G004300 Sobic001G206500--Sobic003G004300 Sobic001G206500--Sobic001G098400 Sobic003G222000 Sobic003G222000 Sobic001G206500--Sobic003G222000 Sobic010G081700 Sobic010G081700 Sobic001G206500--Sobic010G081700 Sobic004G031300 Sobic004G031300 Sobic001G206500--Sobic004G031300 Sobic002G428100 Sobic002G428100 Sobic001G206500--Sobic002G428100 Sobic001G004100 Sobic001G004100 Sobic001G206500--Sobic001G004100 Sobic004G145000 Sobic004G145000 Sobic006G034500--Sobic004G145000 Sobic001G440800 Sobic001G440800 Sobic006G034500--Sobic001G440800 Sobic003G104000 Sobic003G104000 Sobic006G034500--Sobic003G104000 Sobic006G034500--Sobic002G256700 Sobic009G201700 Sobic009G201700 Sobic006G034500--Sobic009G201700 Sobic008G055900 Sobic008G055900 Sobic006G034500--Sobic008G055900 Sobic002G142900 Sobic002G142900 Sobic006G034500--Sobic002G142900 Sobic004G088501 Sobic004G088501 Sobic006G034500--Sobic004G088501 Sobic004G261600 Sobic004G261600 Sobic006G034500--Sobic004G261600 Sobic004G256000--Sobic002G234300 Sobic002G112100 Sobic002G112100 Sobic004G256000--Sobic002G112100 Sobic004G256000--Sobic009G246500 Sobic004G256000--Sobic002G071400 Sobic009G249800 Sobic009G249800 Sobic004G256000--Sobic009G249800 Sobic006G269900 Sobic006G269900 Sobic004G256000--Sobic006G269900 Sobic008G169200 Sobic008G169200 Sobic004G256000--Sobic008G169200 Sobic004G256000--Sobic008G049100 Sobic008G160000 Sobic008G160000 Sobic004G256000--Sobic008G160000 Sobic002G235200 Sobic002G235200 Sobic003G036400--Sobic002G235200 Sobic003G036400--Sobic004G145000 Sobic003G036400--Sobic004G320500 Sobic001G447300 Sobic001G447300 Sobic003G036400--Sobic001G447300 Sobic002G150700 Sobic002G150700 Sobic003G036400--Sobic002G150700 Sobic003G006400 Sobic003G006400 Sobic003G036400--Sobic003G006400 Sobic001G145400 Sobic001G145400 Sobic003G036400--Sobic001G145400 Sobic005G062200 Sobic005G062200 Sobic003G036400--Sobic005G062200 Sobic003G093800 Sobic003G093800 Sobic003G036400--Sobic003G093800
Octagon: transcription factors


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