Gene annotation
Transcriptome id Sobic.005G017100.1
Synonym Sb05g001460
Functional annotation pentatricopeptide, putative, expressed
UniProt C5Y3K7
Pfam PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF365
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G28690 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g25380.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a033330
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G017100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G267500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed -
2 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.006G163650 - -
4 Sobic.001G247000 MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.010G042200 Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.004G059100 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor, putative, expressed -
7 Sobic.003G100200 TOO MANY MOUTHS precursor, putative, expressed -
8 Sobic.002G340350 - -
9 Sobic.001G312700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@selenium-binding protein-like, putative, expressed -
10 Sobic.005G076650 - -
11 Sobic.006G111500 expressed protein -
12 Sobic.009G157000 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
13 Sobic.001G262500 expressed protein -
14 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
15 Sobic.004G043200 expressed protein -
16 Sobic.003G128500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
17 Sobic.009G201200 WD domain, G-beta repeat domain containing protein, expressed K14558: PWP2, periodic tryptophan protein 2
18 Sobic.003G284500 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
19 Sobic.003G359200 DUF740 domain containing protein, expressed -
20 Sobic.001G021700 disease resistance RPP13-like protein 1, putative, expressed -


Gene co-expression network
sample Sobic005G017100 Sobic005G017100 Sobic001G267500 Sobic001G267500 Sobic005G017100--Sobic001G267500 Sobic003G377200 Sobic003G377200 Sobic005G017100--Sobic003G377200 Sobic006G163650 Sobic006G163650 Sobic005G017100--Sobic006G163650 Sobic001G247000 Sobic001G247000 Sobic005G017100--Sobic001G247000 Sobic010G042200 Sobic010G042200 Sobic005G017100--Sobic010G042200 Sobic004G059100 Sobic004G059100 Sobic005G017100--Sobic004G059100 Sobic003G100200 Sobic003G100200 Sobic005G017100--Sobic003G100200 Sobic002G340350 Sobic002G340350 Sobic005G017100--Sobic002G340350 Sobic001G312700 Sobic001G312700 Sobic005G017100--Sobic001G312700 Sobic001G072900 Sobic001G072900 Sobic001G267500--Sobic001G072900 Sobic001G267500--Sobic003G377200 Sobic001G267500--Sobic005G017100 Sobic004G076850 Sobic004G076850 Sobic001G267500--Sobic004G076850 Sobic009G162900 Sobic009G162900 Sobic001G267500--Sobic009G162900 Sobic005G076650 Sobic005G076650 Sobic001G267500--Sobic005G076650 Sobic001G267500--Sobic001G312700 Sobic006G077600 Sobic006G077600 Sobic001G267500--Sobic006G077600 Sobic007G208500 Sobic007G208500 Sobic001G267500--Sobic007G208500 Sobic003G377200--Sobic001G267500 Sobic003G377200--Sobic007G208500 Sobic006G186200 Sobic006G186200 Sobic003G377200--Sobic006G186200 Sobic003G377200--Sobic006G163650 Sobic004G180600 Sobic004G180600 Sobic003G377200--Sobic004G180600 Sobic003G390300 Sobic003G390300 Sobic003G377200--Sobic003G390300 Sobic009G203400 Sobic009G203400 Sobic003G377200--Sobic009G203400 Sobic003G377200--Sobic005G076650 Sobic004G156600 Sobic004G156600 Sobic003G377200--Sobic004G156600 Sobic007G139000 Sobic007G139000 Sobic006G163650--Sobic007G139000 Sobic010G014900 Sobic010G014900 Sobic006G163650--Sobic010G014900 Sobic004G107400 Sobic004G107400 Sobic006G163650--Sobic004G107400 Sobic010G152700 Sobic010G152700 Sobic006G163650--Sobic010G152700 Sobic003G191800 Sobic003G191800 Sobic006G163650--Sobic003G191800 Sobic003G359200 Sobic003G359200 Sobic006G163650--Sobic003G359200 Sobic007G153300 Sobic007G153300 Sobic006G163650--Sobic007G153300 Sobic005G102200 Sobic005G102200 Sobic006G163650--Sobic005G102200 Sobic007G158400 Sobic007G158400 Sobic006G163650--Sobic007G158400 Sobic001G247000--Sobic002G340350 Sobic001G247000--Sobic006G163650 Sobic006G108000 Sobic006G108000 Sobic001G247000--Sobic006G108000 Sobic007G211400 Sobic007G211400 Sobic001G247000--Sobic007G211400 Sobic001G247000--Sobic004G059100 Sobic009G163700 Sobic009G163700 Sobic001G247000--Sobic009G163700 Sobic003G282600 Sobic003G282600 Sobic001G247000--Sobic003G282600 Sobic001G247000--Sobic003G377200 Sobic003G040100 Sobic003G040100 Sobic001G247000--Sobic003G040100 Sobic010G042200--Sobic004G059100 Sobic010G042200--Sobic005G017100 Sobic010G089300 Sobic010G089300 Sobic010G042200--Sobic010G089300 Sobic010G042200--Sobic001G267500 Sobic002G106100 Sobic002G106100 Sobic010G042200--Sobic002G106100 Sobic010G042200--Sobic004G076850 Sobic005G003900 Sobic005G003900 Sobic010G042200--Sobic005G003900 Sobic001G448100 Sobic001G448100 Sobic010G042200--Sobic001G448100 Sobic002G050500 Sobic002G050500 Sobic010G042200--Sobic002G050500 Sobic004G059100--Sobic009G163700 Sobic004G059100--Sobic010G042200 Sobic004G059100--Sobic001G247000 Sobic005G131900 Sobic005G131900 Sobic004G059100--Sobic005G131900 Sobic006G278800 Sobic006G278800 Sobic004G059100--Sobic006G278800 Sobic002G035500 Sobic002G035500 Sobic004G059100--Sobic002G035500 Sobic004G059100--Sobic006G108000 Sobic002G394200 Sobic002G394200 Sobic004G059100--Sobic002G394200 Sobic004G059100--Sobic005G017100 Sobic003G100200--Sobic006G163650 Sobic004G113900 Sobic004G113900 Sobic003G100200--Sobic004G113900 Sobic003G100200--Sobic002G035500 Sobic010G209800 Sobic010G209800 Sobic003G100200--Sobic010G209800 Sobic003G100200--Sobic003G359200 Sobic009G157000 Sobic009G157000 Sobic003G100200--Sobic009G157000 Sobic009G254400 Sobic009G254400 Sobic003G100200--Sobic009G254400 Sobic003G100200--Sobic005G131900 Sobic003G406500 Sobic003G406500 Sobic003G100200--Sobic003G406500 Sobic002G340350--Sobic006G163650 Sobic002G340350--Sobic001G247000 Sobic003G284500 Sobic003G284500 Sobic002G340350--Sobic003G284500 Sobic002G340350--Sobic005G131900 Sobic002G340350--Sobic009G254400 Sobic006G245200 Sobic006G245200 Sobic002G340350--Sobic006G245200 Sobic002G340350--Sobic010G014900 Sobic002G340350--Sobic007G153300 Sobic002G340350--Sobic007G158400 Sobic007G130000 Sobic007G130000 Sobic001G312700--Sobic007G130000 Sobic001G312700--Sobic001G267500 Sobic001G312700--Sobic003G377200 Sobic006G157800 Sobic006G157800 Sobic001G312700--Sobic006G157800 Sobic001G312700--Sobic001G072900 Sobic008G020500 Sobic008G020500 Sobic001G312700--Sobic008G020500 Sobic004G043200 Sobic004G043200 Sobic001G312700--Sobic004G043200 Sobic001G312700--Sobic006G163650 Sobic002G264900 Sobic002G264900 Sobic001G312700--Sobic002G264900
Octagon: transcription factors


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