Gene annotation
Transcriptome id Sobic.010G042200.2
Synonym EMB2745, Sb10g003720
Functional annotation Rf1, mitochondrial precursor, putative, expressed
UniProt A0A1W0VRE9
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF280
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39710 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os06g05920.1 : Rf1, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050001 , Zm00025a037237
Brachypodium PNT76532
Barley HORVU7Hr1G023200.23 , HORVU7Hr1G023200.22 , HORVU7Hr1G023200.10 , HORVU7Hr1G023200.11 , HORVU7Hr1G023200.19 , HORVU7Hr1G023200.8 , HORVU7Hr1G023200.9 , HORVU7Hr1G023200.6 , HORVU7Hr1G023200.2 , HORVU7Hr1G023200.3
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.010G042200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G059100 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor, putative, expressed -
2 Sobic.005G017100 pentatricopeptide, putative, expressed -
3 Sobic.010G089300 expressed protein -
4 Sobic.001G267500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed -
5 Sobic.002G106100 OsFBD15 - F-box and FBD domain containing protein, expressed -
6 Sobic.004G076850 - -
7 Sobic.005G003900 phosphatidate cytidylyltransferase, putative, expressed K15892: farnesol kinase
8 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
9 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
10 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
11 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1
12 Sobic.005G021200 expressed protein -
13 Sobic.006G210100 zinc finger domain, LSD1 subclass family protein, expressed -
14 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
15 Sobic.004G270200 CPuORF20 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
16 Sobic.003G189800 expressed protein K14291: phosphorylated adapter RNA export protein
17 Sobic.002G378600 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
18 Sobic.003G067201 - -
19 Sobic.004G131100 expressed protein -
20 Sobic.001G065300 GRF zinc finger family protein, expressed -


Gene co-expression network
sample Sobic010G042200 Sobic010G042200 Sobic004G059100 Sobic004G059100 Sobic010G042200--Sobic004G059100 Sobic005G017100 Sobic005G017100 Sobic010G042200--Sobic005G017100 Sobic010G089300 Sobic010G089300 Sobic010G042200--Sobic010G089300 Sobic001G267500 Sobic001G267500 Sobic010G042200--Sobic001G267500 Sobic002G106100 Sobic002G106100 Sobic010G042200--Sobic002G106100 Sobic004G076850 Sobic004G076850 Sobic010G042200--Sobic004G076850 Sobic005G003900 Sobic005G003900 Sobic010G042200--Sobic005G003900 Sobic001G448100 Sobic001G448100 Sobic010G042200--Sobic001G448100 Sobic002G050500 Sobic002G050500 Sobic010G042200--Sobic002G050500 Sobic009G163700 Sobic009G163700 Sobic004G059100--Sobic009G163700 Sobic004G059100--Sobic010G042200 Sobic001G247000 Sobic001G247000 Sobic004G059100--Sobic001G247000 Sobic005G131900 Sobic005G131900 Sobic004G059100--Sobic005G131900 Sobic006G278800 Sobic006G278800 Sobic004G059100--Sobic006G278800 Sobic002G035500 Sobic002G035500 Sobic004G059100--Sobic002G035500 Sobic006G108000 Sobic006G108000 Sobic004G059100--Sobic006G108000 Sobic002G394200 Sobic002G394200 Sobic004G059100--Sobic002G394200 Sobic004G059100--Sobic005G017100 Sobic005G017100--Sobic001G267500 Sobic003G377200 Sobic003G377200 Sobic005G017100--Sobic003G377200 Sobic006G163650 Sobic006G163650 Sobic005G017100--Sobic006G163650 Sobic005G017100--Sobic001G247000 Sobic005G017100--Sobic010G042200 Sobic005G017100--Sobic004G059100 Sobic003G100200 Sobic003G100200 Sobic005G017100--Sobic003G100200 Sobic002G340350 Sobic002G340350 Sobic005G017100--Sobic002G340350 Sobic001G312700 Sobic001G312700 Sobic005G017100--Sobic001G312700 Sobic010G089300--Sobic010G042200 Sobic006G111500 Sobic006G111500 Sobic010G089300--Sobic006G111500 Sobic004G123600 Sobic004G123600 Sobic010G089300--Sobic004G123600 Sobic010G089300--Sobic004G059100 Sobic010G089300--Sobic005G017100 Sobic009G157000 Sobic009G157000 Sobic010G089300--Sobic009G157000 Sobic006G178800 Sobic006G178800 Sobic010G089300--Sobic006G178800 Sobic002G396200 Sobic002G396200 Sobic010G089300--Sobic002G396200 Sobic010G089300--Sobic006G163650 Sobic001G072900 Sobic001G072900 Sobic001G267500--Sobic001G072900 Sobic001G267500--Sobic003G377200 Sobic001G267500--Sobic005G017100 Sobic001G267500--Sobic004G076850 Sobic009G162900 Sobic009G162900 Sobic001G267500--Sobic009G162900 Sobic005G076650 Sobic005G076650 Sobic001G267500--Sobic005G076650 Sobic001G267500--Sobic001G312700 Sobic006G077600 Sobic006G077600 Sobic001G267500--Sobic006G077600 Sobic007G208500 Sobic007G208500 Sobic001G267500--Sobic007G208500 Sobic002G166500 Sobic002G166500 Sobic002G106100--Sobic002G166500 Sobic006G210100 Sobic006G210100 Sobic002G106100--Sobic006G210100 Sobic001G303675 Sobic001G303675 Sobic002G106100--Sobic001G303675 Sobic003G307000 Sobic003G307000 Sobic002G106100--Sobic003G307000 Sobic001G371000 Sobic001G371000 Sobic002G106100--Sobic001G371000 Sobic006G076300 Sobic006G076300 Sobic002G106100--Sobic006G076300 Sobic001G360900 Sobic001G360900 Sobic002G106100--Sobic001G360900 Sobic005G015100 Sobic005G015100 Sobic002G106100--Sobic005G015100 Sobic003G163100 Sobic003G163100 Sobic002G106100--Sobic003G163100 Sobic004G076850--Sobic006G077600 Sobic002G264900 Sobic002G264900 Sobic004G076850--Sobic002G264900 Sobic004G076850--Sobic001G267500 Sobic004G270200 Sobic004G270200 Sobic004G076850--Sobic004G270200 Sobic004G204000 Sobic004G204000 Sobic004G076850--Sobic004G204000 Sobic004G076850--Sobic001G072900 Sobic005G123400 Sobic005G123400 Sobic004G076850--Sobic005G123400 Sobic002G313100 Sobic002G313100 Sobic004G076850--Sobic002G313100 Sobic002G380700 Sobic002G380700 Sobic004G076850--Sobic002G380700 Sobic010G267650 Sobic010G267650 Sobic005G003900--Sobic010G267650 Sobic009G230400 Sobic009G230400 Sobic005G003900--Sobic009G230400 Sobic006G073001 Sobic006G073001 Sobic005G003900--Sobic006G073001 Sobic007G159800 Sobic007G159800 Sobic005G003900--Sobic007G159800 Sobic005G003900--Sobic002G106100 Sobic005G003900--Sobic006G210100 Sobic010G057400 Sobic010G057400 Sobic005G003900--Sobic010G057400 Sobic003G259901 Sobic003G259901 Sobic005G003900--Sobic003G259901 Sobic005G003900--Sobic002G166500 Sobic002G079100 Sobic002G079100 Sobic001G448100--Sobic002G079100 Sobic003G397100 Sobic003G397100 Sobic001G448100--Sobic003G397100 Sobic004G007900 Sobic004G007900 Sobic001G448100--Sobic004G007900 Sobic002G235900 Sobic002G235900 Sobic001G448100--Sobic002G235900 Sobic002G380100 Sobic002G380100 Sobic001G448100--Sobic002G380100 Sobic009G154900 Sobic009G154900 Sobic001G448100--Sobic009G154900 Sobic001G522400 Sobic001G522400 Sobic001G448100--Sobic001G522400 Sobic009G000400 Sobic009G000400 Sobic001G448100--Sobic009G000400 Sobic003G067201 Sobic003G067201 Sobic001G448100--Sobic003G067201 Sobic006G210200 Sobic006G210200 Sobic002G050500--Sobic006G210200 Sobic001G268700 Sobic001G268700 Sobic002G050500--Sobic001G268700 Sobic002G140800 Sobic002G140800 Sobic002G050500--Sobic002G140800 Sobic008G056350 Sobic008G056350 Sobic002G050500--Sobic008G056350 Sobic001G045700 Sobic001G045700 Sobic002G050500--Sobic001G045700 Sobic002G060450 Sobic002G060450 Sobic002G050500--Sobic002G060450 Sobic001G454301 Sobic001G454301 Sobic002G050500--Sobic001G454301 Sobic002G223300 Sobic002G223300 Sobic002G050500--Sobic002G223300 Sobic003G128600 Sobic003G128600 Sobic002G050500--Sobic003G128600
Octagon: transcription factors


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