Gene annotation
Transcriptome id Sobic.009G228300.1
Synonym NFD1, Sb09g028120
Functional annotation 50S ribosomal protein L21, chloroplast precursor, putative, expressed
UniProt C5YVG2
Pfam PF00829
Panther DB PTHR21349 PTHR21349:SF0
NCBI CDD KOG1686; Mitochondrial/chloroplast ribosomal L21 protein
KEGG Orthology K02888; RP-L21, MRPL21, large subunit ribosomal protein L21
Gene Ontology GO:0005840; ribosome


Orthologs (automatic annotation)
TAIR AT4G30930 : Ribosomal protein L21
RAP-DB (Rice) LOC_Os05g48410.1 : 50S ribosomal protein L21, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a044524 , Zm00025a036569
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G228300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G072900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.004G172600 tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.005G034600 expressed protein -
4 Sobic.003G054100 expressed protein -
5 Sobic.001G267500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed -
6 Sobic.001G312700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@selenium-binding protein-like, putative, expressed -
7 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.007G130000 STE_MEKK_ste11_MAP3K.21 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
9 Sobic.004G076850 - -
10 Sobic.007G164300 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@rotamase("PubMedID : 26759170,PubMedID : 24597475")@peptidyl-prolyl cis-trans isomerase, putative, expressed -
11 Sobic.010G050400 methyltransferase-like protein 5, putative, expressed -
12 Sobic.010G161525 - -
13 Sobic.002G264900 RNA recognition motif containing protein, putative, expressed -
14 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
15 Sobic.004G007700 pentatricopeptide, putative, expressed -
16 Sobic.001G210700 HNH endonuclease domain-containing protein, putative, expressed -
17 Sobic.006G078800 - -
18 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
20 Sobic.004G082700 PPR repeat containing protein, expressed -


Gene co-expression network
sample Sobic009G228300 Sobic009G228300 Sobic001G072900 Sobic001G072900 Sobic009G228300--Sobic001G072900 Sobic004G172600 Sobic004G172600 Sobic009G228300--Sobic004G172600 Sobic005G034600 Sobic005G034600 Sobic009G228300--Sobic005G034600 Sobic003G054100 Sobic003G054100 Sobic009G228300--Sobic003G054100 Sobic001G267500 Sobic001G267500 Sobic009G228300--Sobic001G267500 Sobic001G312700 Sobic001G312700 Sobic009G228300--Sobic001G312700 Sobic010G018900 Sobic010G018900 Sobic009G228300--Sobic010G018900 Sobic007G130000 Sobic007G130000 Sobic009G228300--Sobic007G130000 Sobic004G076850 Sobic004G076850 Sobic009G228300--Sobic004G076850 Sobic001G072900--Sobic001G267500 Sobic001G487000 Sobic001G487000 Sobic001G072900--Sobic001G487000 Sobic006G077600 Sobic006G077600 Sobic001G072900--Sobic006G077600 Sobic002G363700 Sobic002G363700 Sobic001G072900--Sobic002G363700 Sobic003G377200 Sobic003G377200 Sobic001G072900--Sobic003G377200 Sobic001G541601 Sobic001G541601 Sobic001G072900--Sobic001G541601 Sobic007G208500 Sobic007G208500 Sobic001G072900--Sobic007G208500 Sobic006G278900 Sobic006G278900 Sobic001G072900--Sobic006G278900 Sobic001G072900--Sobic009G228300 Sobic004G172600--Sobic003G054100 Sobic004G172600--Sobic009G228300 Sobic004G172600--Sobic005G034600 Sobic004G172600--Sobic001G072900 Sobic009G243900 Sobic009G243900 Sobic004G172600--Sobic009G243900 Sobic001G171500 Sobic001G171500 Sobic004G172600--Sobic001G171500 Sobic004G172600--Sobic001G487000 Sobic001G513100 Sobic001G513100 Sobic004G172600--Sobic001G513100 Sobic001G150800 Sobic001G150800 Sobic004G172600--Sobic001G150800 Sobic007G164300 Sobic007G164300 Sobic005G034600--Sobic007G164300 Sobic002G219800 Sobic002G219800 Sobic005G034600--Sobic002G219800 Sobic005G034600--Sobic009G228300 Sobic005G034600--Sobic001G072900 Sobic004G043600 Sobic004G043600 Sobic005G034600--Sobic004G043600 Sobic005G034600--Sobic004G172600 Sobic002G332100 Sobic002G332100 Sobic005G034600--Sobic002G332100 Sobic001G436100 Sobic001G436100 Sobic005G034600--Sobic001G436100 Sobic010G277000 Sobic010G277000 Sobic005G034600--Sobic010G277000 Sobic003G054100--Sobic004G172600 Sobic003G054100--Sobic001G487000 Sobic003G049800 Sobic003G049800 Sobic003G054100--Sobic003G049800 Sobic010G231700 Sobic010G231700 Sobic003G054100--Sobic010G231700 Sobic006G255800 Sobic006G255800 Sobic003G054100--Sobic006G255800 Sobic003G395500 Sobic003G395500 Sobic003G054100--Sobic003G395500 Sobic003G054100--Sobic001G072900 Sobic003G054100--Sobic009G228300 Sobic003G095200 Sobic003G095200 Sobic003G054100--Sobic003G095200 Sobic001G267500--Sobic001G072900 Sobic001G267500--Sobic003G377200 Sobic005G017100 Sobic005G017100 Sobic001G267500--Sobic005G017100 Sobic001G267500--Sobic004G076850 Sobic009G162900 Sobic009G162900 Sobic001G267500--Sobic009G162900 Sobic005G076650 Sobic005G076650 Sobic001G267500--Sobic005G076650 Sobic001G267500--Sobic001G312700 Sobic001G267500--Sobic006G077600 Sobic001G267500--Sobic007G208500 Sobic001G312700--Sobic007G130000 Sobic001G312700--Sobic001G267500 Sobic001G312700--Sobic003G377200 Sobic006G157800 Sobic006G157800 Sobic001G312700--Sobic006G157800 Sobic001G312700--Sobic001G072900 Sobic008G020500 Sobic008G020500 Sobic001G312700--Sobic008G020500 Sobic004G043200 Sobic004G043200 Sobic001G312700--Sobic004G043200 Sobic006G163650 Sobic006G163650 Sobic001G312700--Sobic006G163650 Sobic002G264900 Sobic002G264900 Sobic001G312700--Sobic002G264900 Sobic002G308000 Sobic002G308000 Sobic010G018900--Sobic002G308000 Sobic010G257500 Sobic010G257500 Sobic010G018900--Sobic010G257500 Sobic004G007700 Sobic004G007700 Sobic010G018900--Sobic004G007700 Sobic002G066800 Sobic002G066800 Sobic010G018900--Sobic002G066800 Sobic010G038900 Sobic010G038900 Sobic010G018900--Sobic010G038900 Sobic002G271400 Sobic002G271400 Sobic010G018900--Sobic002G271400 Sobic010G269800 Sobic010G269800 Sobic010G018900--Sobic010G269800 Sobic009G063800 Sobic009G063800 Sobic010G018900--Sobic009G063800 Sobic006G272300 Sobic006G272300 Sobic010G018900--Sobic006G272300 Sobic004G198200 Sobic004G198200 Sobic007G130000--Sobic004G198200 Sobic001G427400 Sobic001G427400 Sobic007G130000--Sobic001G427400 Sobic007G130000--Sobic008G020500 Sobic005G056800 Sobic005G056800 Sobic007G130000--Sobic005G056800 Sobic001G494300 Sobic001G494300 Sobic007G130000--Sobic001G494300 Sobic006G155900 Sobic006G155900 Sobic007G130000--Sobic006G155900 Sobic003G040100 Sobic003G040100 Sobic007G130000--Sobic003G040100 Sobic002G380700 Sobic002G380700 Sobic007G130000--Sobic002G380700 Sobic001G284900 Sobic001G284900 Sobic007G130000--Sobic001G284900 Sobic004G076850--Sobic006G077600 Sobic004G076850--Sobic002G264900 Sobic004G076850--Sobic001G267500 Sobic004G270200 Sobic004G270200 Sobic004G076850--Sobic004G270200 Sobic004G204000 Sobic004G204000 Sobic004G076850--Sobic004G204000 Sobic004G076850--Sobic001G072900 Sobic005G123400 Sobic005G123400 Sobic004G076850--Sobic005G123400 Sobic002G313100 Sobic002G313100 Sobic004G076850--Sobic002G313100 Sobic004G076850--Sobic002G380700
Octagon: transcription factors


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