Gene annotation
Transcriptome id Sobic.002G152900.1
Synonym HYP6, TOP6B, RHL3, Sb02g018660, BIN3, ATTOP6B
Functional annotation OsTOP6B - Topoisomerase 6 subunit B, expressed
UniProt C5X862
Pfam PF02518 PF09239
Panther DB PTHR10871 PTHR10871:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006265; DNA topological change GO:0003918DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity GO:0003677DNA binding GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G20780 : topoisomerase 6 subunit B
RAP-DB (Rice) LOC_Os09g10770.1 : OsTOP6B - Topoisomerase 6 subunit B, expressed
MaizeGDB (Corn) Zm00025a046263
Brachypodium PNT64280 , KQJ89661 , PNT64279 , KQJ89662
Barley HORVU5Hr1G053310.20 , HORVU5Hr1G053310.21 , HORVU5Hr1G053310.19 , HORVU5Hr1G053310.18 , HORVU5Hr1G053310.13 , HORVU5Hr1G053310.12 , HORVU5Hr1G053310.11 , HORVU5Hr1G053310.10 , HORVU5Hr1G053310.17 , HORVU5Hr1G053310.16 , HORVU5Hr1G053310.15 , HORVU5Hr1G053310.14 , HORVU5Hr1G053310.9 , HORVU5Hr1G053310.8 , HORVU5Hr1G053310.3 , HORVU5Hr1G053310.1 , HORVU5Hr1G053310.7 , HORVU5Hr1G053310.5 , HORVU5Hr1G053310.4
Wheat TraesCS5B02G171400 , TraesCS5D02G178400 , TraesCS5A02G173900 , TraesCS5A02G173900 , TraesCS5A02G173900 , TraesCS5B02G171400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
2 Sobic.002G214700 DNA repair metallo-beta-lactamase family protein, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
3 Sobic.010G250800 DNA binding protein, putative, expressed -
4 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
5 Sobic.001G368100 expressed protein K18158: nuclear control of ATPase protein 2
6 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
7 Sobic.002G056400 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
8 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -
9 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
10 Sobic.003G209400 expressed protein -
11 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
12 Sobic.005G088900 AGAP007117-PA, putative, expressed -
13 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
14 Sobic.002G135100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K02326: DNA polymerase epsilon subunit 3
15 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
17 Sobic.010G161525 - -
18 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
19 Sobic.001G300000 - -
20 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial


Gene co-expression network
sample Sobic002G152900 Sobic002G152900 Sobic004G038100 Sobic004G038100 Sobic002G152900--Sobic004G038100 Sobic002G214700 Sobic002G214700 Sobic002G152900--Sobic002G214700 Sobic010G250800 Sobic010G250800 Sobic002G152900--Sobic010G250800 Sobic007G114000 Sobic007G114000 Sobic002G152900--Sobic007G114000 Sobic001G368100 Sobic001G368100 Sobic002G152900--Sobic001G368100 Sobic004G215900 Sobic004G215900 Sobic002G152900--Sobic004G215900 Sobic002G056400 Sobic002G056400 Sobic002G152900--Sobic002G056400 Sobic003G250900 Sobic003G250900 Sobic002G152900--Sobic003G250900 Sobic006G181800 Sobic006G181800 Sobic002G152900--Sobic006G181800 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic004G038100--Sobic001G373000 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic002G214700--Sobic002G152900 Sobic002G214700--Sobic010G250800 Sobic002G214700--Sobic004G038100 Sobic003G231100 Sobic003G231100 Sobic002G214700--Sobic003G231100 Sobic003G369200 Sobic003G369200 Sobic002G214700--Sobic003G369200 Sobic004G129600 Sobic004G129600 Sobic002G214700--Sobic004G129600 Sobic003G393100 Sobic003G393100 Sobic002G214700--Sobic003G393100 Sobic003G274400 Sobic003G274400 Sobic002G214700--Sobic003G274400 Sobic007G006800 Sobic007G006800 Sobic002G214700--Sobic007G006800 Sobic009G052100 Sobic009G052100 Sobic010G250800--Sobic009G052100 Sobic010G250800--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic010G250800--Sobic006G071628 Sobic001G408300 Sobic001G408300 Sobic010G250800--Sobic001G408300 Sobic001G385400 Sobic001G385400 Sobic010G250800--Sobic001G385400 Sobic009G167100 Sobic009G167100 Sobic010G250800--Sobic009G167100 Sobic005G088900 Sobic005G088900 Sobic010G250800--Sobic005G088900 Sobic009G049200 Sobic009G049200 Sobic010G250800--Sobic009G049200 Sobic010G250800--Sobic004G038100 Sobic005G100900 Sobic005G100900 Sobic007G114000--Sobic005G100900 Sobic006G035500 Sobic006G035500 Sobic007G114000--Sobic006G035500 Sobic007G114000--Sobic010G188000 Sobic007G114000--Sobic002G152900 Sobic009G071700 Sobic009G071700 Sobic007G114000--Sobic009G071700 Sobic010G161525 Sobic010G161525 Sobic007G114000--Sobic010G161525 Sobic006G157000 Sobic006G157000 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic007G114000--Sobic001G368100 Sobic001G368100--Sobic006G071628 Sobic001G368100--Sobic002G152900 Sobic001G368100--Sobic010G188000 Sobic007G139500 Sobic007G139500 Sobic001G368100--Sobic007G139500 Sobic004G215700 Sobic004G215700 Sobic001G368100--Sobic004G215700 Sobic009G214100 Sobic009G214100 Sobic001G368100--Sobic009G214100 Sobic007G173000 Sobic007G173000 Sobic001G368100--Sobic007G173000 Sobic004G156200 Sobic004G156200 Sobic001G368100--Sobic004G156200 Sobic010G236600 Sobic010G236600 Sobic001G368100--Sobic010G236600 Sobic008G068100 Sobic008G068100 Sobic004G215900--Sobic008G068100 Sobic006G236000 Sobic006G236000 Sobic004G215900--Sobic006G236000 Sobic009G191500 Sobic009G191500 Sobic004G215900--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic002G043000 Sobic002G043000 Sobic004G215900--Sobic002G043000 Sobic002G056400--Sobic010G188000 Sobic002G056400--Sobic002G152900 Sobic002G056400--Sobic010G236600 Sobic002G056400--Sobic007G114000 Sobic004G082700 Sobic004G082700 Sobic002G056400--Sobic004G082700 Sobic002G056400--Sobic001G368100 Sobic003G008600 Sobic003G008600 Sobic002G056400--Sobic003G008600 Sobic002G264300 Sobic002G264300 Sobic002G056400--Sobic002G264300 Sobic001G008500 Sobic001G008500 Sobic002G056400--Sobic001G008500 Sobic001G437400 Sobic001G437400 Sobic003G250900--Sobic001G437400 Sobic002G150800 Sobic002G150800 Sobic003G250900--Sobic002G150800 Sobic001G143600 Sobic001G143600 Sobic003G250900--Sobic001G143600 Sobic003G314700 Sobic003G314700 Sobic003G250900--Sobic003G314700 Sobic010G138900 Sobic010G138900 Sobic003G250900--Sobic010G138900 Sobic003G250900--Sobic009G049200 Sobic006G265600 Sobic006G265600 Sobic003G250900--Sobic006G265600 Sobic002G051800 Sobic002G051800 Sobic003G250900--Sobic002G051800 Sobic003G250900--Sobic006G280100 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic002G426100 Sobic002G426100 Sobic006G181800--Sobic002G426100 Sobic006G181800--Sobic006G033101 Sobic002G371600 Sobic002G371600 Sobic006G181800--Sobic002G371600 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G181800--Sobic006G236000 Sobic006G181800--Sobic010G188000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.