Gene annotation
Transcriptome id Sobic.002G135100.1
Synonym SbNF-YB2, NF-YB11, Nuclear Factor Y, Sb02g012030
Functional annotation tentative name (PubMedID : 31536532)
histone-like transcription factor and archaeal histone, putative, expressed
UniProt C5X5Y5
Pfam PF00808
Panther DB PTHR11064
NCBI CDD KOG0870; DNA polymerase epsilon, subunit D
KEGG Orthology K02326; DNA polymerase epsilon subunit 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27470 : nuclear factor Y, subunit B11
RAP-DB (Rice) LOC_Os09g39490.1 : histone-like transcription factor and archaeal histone, putative, expressed
MaizeGDB (Corn) Zm00025a046177
Brachypodium -
Barley -
Wheat TraesCS4B02G008300 , TraesCS4D02G007000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G135100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G087300 mitotic checkpoint family protein, putative, expressed -
2 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
3 Sobic.003G212600 ubiquitin-conjugating enzyme, putative, expressed K13960: UBE2T, ubiquitin-conjugating enzyme E2 T
4 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
5 Sobic.007G209600 ENT domain containing protein, expressed -
6 Sobic.002G303800 expressed protein -
7 Sobic.002G152900 OsTOP6B - Topoisomerase 6 subunit B, expressed -
8 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
9 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.007G006800 pentatricopeptide, putative, expressed -
12 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
13 Sobic.004G208100 expressed protein -
14 Sobic.002G370400 expressed protein -
15 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
16 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.005G088900 AGAP007117-PA, putative, expressed -
18 Sobic.004G327600 expressed protein -
19 Sobic.001G033000 ribosomal RNA large subunit methyltransferase J, putative, expressed -
20 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic002G135100 Sobic002G135100 Sobic009G087300 Sobic009G087300 Sobic002G135100--Sobic009G087300 Sobic003G444300 Sobic003G444300 Sobic002G135100--Sobic003G444300 Sobic003G212600 Sobic003G212600 Sobic002G135100--Sobic003G212600 Sobic004G047500 Sobic004G047500 Sobic002G135100--Sobic004G047500 Sobic007G209600 Sobic007G209600 Sobic002G135100--Sobic007G209600 Sobic002G303800 Sobic002G303800 Sobic002G135100--Sobic002G303800 Sobic002G152900 Sobic002G152900 Sobic002G135100--Sobic002G152900 Sobic001G061800 Sobic001G061800 Sobic002G135100--Sobic001G061800 Sobic001G408300 Sobic001G408300 Sobic002G135100--Sobic001G408300 Sobic002G204400 Sobic002G204400 Sobic009G087300--Sobic002G204400 Sobic010G105400 Sobic010G105400 Sobic009G087300--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic009G087300--Sobic005G144600 Sobic009G087300--Sobic002G303800 Sobic003G201000 Sobic003G201000 Sobic009G087300--Sobic003G201000 Sobic001G122100 Sobic001G122100 Sobic009G087300--Sobic001G122100 Sobic009G087300--Sobic003G444300 Sobic006G281400 Sobic006G281400 Sobic009G087300--Sobic006G281400 Sobic005G000500 Sobic005G000500 Sobic009G087300--Sobic005G000500 Sobic001G456500 Sobic001G456500 Sobic003G444300--Sobic001G456500 Sobic001G083300 Sobic001G083300 Sobic003G444300--Sobic001G083300 Sobic001G169800 Sobic001G169800 Sobic003G444300--Sobic001G169800 Sobic001G105800 Sobic001G105800 Sobic003G444300--Sobic001G105800 Sobic001G142000 Sobic001G142000 Sobic003G444300--Sobic001G142000 Sobic004G331600 Sobic004G331600 Sobic003G444300--Sobic004G331600 Sobic003G444300--Sobic003G201000 Sobic003G444300--Sobic002G303800 Sobic003G444300--Sobic010G105400 Sobic001G054700 Sobic001G054700 Sobic003G212600--Sobic001G054700 Sobic007G076200 Sobic007G076200 Sobic003G212600--Sobic007G076200 Sobic003G212600--Sobic002G204400 Sobic001G140700 Sobic001G140700 Sobic003G212600--Sobic001G140700 Sobic003G212600--Sobic009G087300 Sobic003G212600--Sobic010G105400 Sobic001G231200 Sobic001G231200 Sobic003G212600--Sobic001G231200 Sobic002G021200 Sobic002G021200 Sobic003G212600--Sobic002G021200 Sobic001G296800 Sobic001G296800 Sobic003G212600--Sobic001G296800 Sobic001G107300 Sobic001G107300 Sobic004G047500--Sobic001G107300 Sobic001G371100 Sobic001G371100 Sobic004G047500--Sobic001G371100 Sobic002G133000 Sobic002G133000 Sobic004G047500--Sobic002G133000 Sobic004G047500--Sobic002G303800 Sobic004G047500--Sobic002G135100 Sobic004G208100 Sobic004G208100 Sobic004G047500--Sobic004G208100 Sobic004G336600 Sobic004G336600 Sobic004G047500--Sobic004G336600 Sobic002G267600 Sobic002G267600 Sobic004G047500--Sobic002G267600 Sobic004G047500--Sobic001G061800 Sobic001G211500 Sobic001G211500 Sobic007G209600--Sobic001G211500 Sobic004G287100 Sobic004G287100 Sobic007G209600--Sobic004G287100 Sobic002G219900 Sobic002G219900 Sobic007G209600--Sobic002G219900 Sobic007G209600--Sobic003G212600 Sobic001G300000 Sobic001G300000 Sobic007G209600--Sobic001G300000 Sobic003G311500 Sobic003G311500 Sobic007G209600--Sobic003G311500 Sobic001G210000 Sobic001G210000 Sobic007G209600--Sobic001G210000 Sobic004G343200 Sobic004G343200 Sobic007G209600--Sobic004G343200 Sobic004G352100 Sobic004G352100 Sobic007G209600--Sobic004G352100 Sobic002G303800--Sobic003G444300 Sobic006G120600 Sobic006G120600 Sobic002G303800--Sobic006G120600 Sobic002G303800--Sobic001G169800 Sobic003G183700 Sobic003G183700 Sobic002G303800--Sobic003G183700 Sobic010G103700 Sobic010G103700 Sobic002G303800--Sobic010G103700 Sobic001G146900 Sobic001G146900 Sobic002G303800--Sobic001G146900 Sobic003G179500 Sobic003G179500 Sobic002G303800--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic002G303800--Sobic006G051000 Sobic002G303800--Sobic001G083300 Sobic004G038100 Sobic004G038100 Sobic002G152900--Sobic004G038100 Sobic002G214700 Sobic002G214700 Sobic002G152900--Sobic002G214700 Sobic010G250800 Sobic010G250800 Sobic002G152900--Sobic010G250800 Sobic007G114000 Sobic007G114000 Sobic002G152900--Sobic007G114000 Sobic001G368100 Sobic001G368100 Sobic002G152900--Sobic001G368100 Sobic004G215900 Sobic004G215900 Sobic002G152900--Sobic004G215900 Sobic002G056400 Sobic002G056400 Sobic002G152900--Sobic002G056400 Sobic003G250900 Sobic003G250900 Sobic002G152900--Sobic003G250900 Sobic006G181800 Sobic006G181800 Sobic002G152900--Sobic006G181800 Sobic001G061800--Sobic001G408300 Sobic003G223500 Sobic003G223500 Sobic001G061800--Sobic003G223500 Sobic005G088900 Sobic005G088900 Sobic001G061800--Sobic005G088900 Sobic001G024000 Sobic001G024000 Sobic001G061800--Sobic001G024000 Sobic005G028100 Sobic005G028100 Sobic001G061800--Sobic005G028100 Sobic004G047200 Sobic004G047200 Sobic001G061800--Sobic004G047200 Sobic008G009600 Sobic008G009600 Sobic001G061800--Sobic008G009600 Sobic006G251600 Sobic006G251600 Sobic001G061800--Sobic006G251600 Sobic001G061800--Sobic004G287100 Sobic007G006800 Sobic007G006800 Sobic001G408300--Sobic007G006800 Sobic001G408300--Sobic010G250800 Sobic010G065800 Sobic010G065800 Sobic001G408300--Sobic010G065800 Sobic010G038800 Sobic010G038800 Sobic001G408300--Sobic010G038800 Sobic001G408300--Sobic001G061800 Sobic006G208400 Sobic006G208400 Sobic001G408300--Sobic006G208400 Sobic001G408300--Sobic005G088900 Sobic009G010300 Sobic009G010300 Sobic001G408300--Sobic009G010300 Sobic010G252700 Sobic010G252700 Sobic001G408300--Sobic010G252700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.