Gene annotation
Transcriptome id Sobic.002G056400.1
Synonym ATKU70, Sb02g004740, KU70
Functional annotation -
UniProt C5XB55
Pfam PF03731 PF02735 PF03730 PF02037
Panther DB PTHR12604:SF2 PTHR12604
NCBI CDD KOG2327; DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen)
KEGG Orthology K10884; XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
Gene Ontology GO:0000723; telomere maintenance GO:0003684damaged DNA binding GO:0005634nucleus GO:0003677DNA binding GO:0004003DNA helicase activity GO:0006303double-strand break repair via nonhomologous end joining


Orthologs (automatic annotation)
TAIR AT1G16970 : KU70 homolog
RAP-DB (Rice) LOC_Os07g08729.1 : ATP-dependent DNA helicase 2 subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a016073 , Zm00025a016074
Brachypodium KQK20547
Barley HORVU5Hr1G012090.20 , HORVU5Hr1G012090.14 , HORVU5Hr1G012090.13 , HORVU5Hr1G012090.12 , HORVU5Hr1G012090.11 , HORVU5Hr1G012090.10 , HORVU5Hr1G012090.19 , HORVU5Hr1G012090.18 , HORVU5Hr1G012090.9 , HORVU5Hr1G012090.8 , HORVU5Hr1G012090.6 , HORVU5Hr1G012090.5 , HORVU5Hr1G012090.3 , HORVU5Hr1G012090.2 , HORVU5Hr1G012090.26 , HORVU5Hr1G012090.24 , HORVU5Hr1G012090.25 , HORVU5Hr1G012090.22 , HORVU5Hr1G012090.23 , HORVU5Hr1G012090.21 , HORVU5Hr1G012090.17 , HORVU5Hr1G012090.16 , HORVU5Hr1G012090.15
Wheat TraesCS5D02G062500 , TraesCS5D02G062500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
2 Sobic.002G152900 OsTOP6B - Topoisomerase 6 subunit B, expressed -
3 Sobic.010G236600 oligopeptidase, putative, expressed K01410: mitochondrial intermediate peptidase
4 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
5 Sobic.004G082700 PPR repeat containing protein, expressed -
6 Sobic.001G368100 expressed protein K18158: nuclear control of ATPase protein 2
7 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
8 Sobic.002G264300 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
9 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
10 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
11 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
12 Sobic.010G250800 DNA binding protein, putative, expressed -
13 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
14 Sobic.006G071628 - -
15 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
16 Sobic.003G144000 pentatricopeptide, putative, expressed -
17 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
18 Sobic.005G088900 AGAP007117-PA, putative, expressed -
19 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
20 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B


Gene co-expression network
sample Sobic002G056400 Sobic002G056400 Sobic010G188000 Sobic010G188000 Sobic002G056400--Sobic010G188000 Sobic002G152900 Sobic002G152900 Sobic002G056400--Sobic002G152900 Sobic010G236600 Sobic010G236600 Sobic002G056400--Sobic010G236600 Sobic007G114000 Sobic007G114000 Sobic002G056400--Sobic007G114000 Sobic004G082700 Sobic004G082700 Sobic002G056400--Sobic004G082700 Sobic001G368100 Sobic001G368100 Sobic002G056400--Sobic001G368100 Sobic003G008600 Sobic003G008600 Sobic002G056400--Sobic003G008600 Sobic002G264300 Sobic002G264300 Sobic002G056400--Sobic002G264300 Sobic001G008500 Sobic001G008500 Sobic002G056400--Sobic001G008500 Sobic001G373000 Sobic001G373000 Sobic010G188000--Sobic001G373000 Sobic004G038100 Sobic004G038100 Sobic010G188000--Sobic004G038100 Sobic002G371600 Sobic002G371600 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic004G315500 Sobic004G315500 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G188000--Sobic010G236600 Sobic002G152900--Sobic004G038100 Sobic002G214700 Sobic002G214700 Sobic002G152900--Sobic002G214700 Sobic010G250800 Sobic010G250800 Sobic002G152900--Sobic010G250800 Sobic002G152900--Sobic007G114000 Sobic002G152900--Sobic001G368100 Sobic004G215900 Sobic004G215900 Sobic002G152900--Sobic004G215900 Sobic002G152900--Sobic002G056400 Sobic003G250900 Sobic003G250900 Sobic002G152900--Sobic003G250900 Sobic002G152900--Sobic006G181800 Sobic006G208400 Sobic006G208400 Sobic010G236600--Sobic006G208400 Sobic010G236600--Sobic010G188000 Sobic009G045900 Sobic009G045900 Sobic010G236600--Sobic009G045900 Sobic001G460500 Sobic001G460500 Sobic010G236600--Sobic001G460500 Sobic010G236600--Sobic003G008600 Sobic002G145300 Sobic002G145300 Sobic010G236600--Sobic002G145300 Sobic010G236600--Sobic010G250800 Sobic010G236600--Sobic001G368100 Sobic010G236600--Sobic002G056400 Sobic005G100900 Sobic005G100900 Sobic007G114000--Sobic005G100900 Sobic006G035500 Sobic006G035500 Sobic007G114000--Sobic006G035500 Sobic007G114000--Sobic010G188000 Sobic007G114000--Sobic002G152900 Sobic009G071700 Sobic009G071700 Sobic007G114000--Sobic009G071700 Sobic010G161525 Sobic010G161525 Sobic007G114000--Sobic010G161525 Sobic006G157000 Sobic006G157000 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic007G114000--Sobic001G368100 Sobic008G100700 Sobic008G100700 Sobic004G082700--Sobic008G100700 Sobic001G167500 Sobic001G167500 Sobic004G082700--Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic004G082700--Sobic010G134100 Sobic003G144000 Sobic003G144000 Sobic004G082700--Sobic003G144000 Sobic001G371100 Sobic001G371100 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic005G098000 Sobic005G098000 Sobic004G082700--Sobic005G098000 Sobic004G082700--Sobic001G008500 Sobic001G493400 Sobic001G493400 Sobic004G082700--Sobic001G493400 Sobic006G071628 Sobic006G071628 Sobic001G368100--Sobic006G071628 Sobic001G368100--Sobic002G152900 Sobic001G368100--Sobic010G188000 Sobic007G139500 Sobic007G139500 Sobic001G368100--Sobic007G139500 Sobic004G215700 Sobic004G215700 Sobic001G368100--Sobic004G215700 Sobic009G214100 Sobic009G214100 Sobic001G368100--Sobic009G214100 Sobic007G173000 Sobic007G173000 Sobic001G368100--Sobic007G173000 Sobic004G156200 Sobic004G156200 Sobic001G368100--Sobic004G156200 Sobic001G368100--Sobic010G236600 Sobic003G008600--Sobic001G008500 Sobic001G115500 Sobic001G115500 Sobic003G008600--Sobic001G115500 Sobic002G423500 Sobic002G423500 Sobic003G008600--Sobic002G423500 Sobic002G365900 Sobic002G365900 Sobic003G008600--Sobic002G365900 Sobic002G208400 Sobic002G208400 Sobic003G008600--Sobic002G208400 Sobic003G008600--Sobic004G215700 Sobic003G008600--Sobic001G460500 Sobic004G075200 Sobic004G075200 Sobic003G008600--Sobic004G075200 Sobic003G130000 Sobic003G130000 Sobic003G008600--Sobic003G130000 Sobic002G264300--Sobic001G115500 Sobic010G073500 Sobic010G073500 Sobic002G264300--Sobic010G073500 Sobic002G126800 Sobic002G126800 Sobic002G264300--Sobic002G126800 Sobic009G151800 Sobic009G151800 Sobic002G264300--Sobic009G151800 Sobic002G264300--Sobic001G373000 Sobic002G264300--Sobic001G008500 Sobic004G030400 Sobic004G030400 Sobic002G264300--Sobic004G030400 Sobic002G264300--Sobic006G071628 Sobic002G264300--Sobic004G075200 Sobic004G047200 Sobic004G047200 Sobic001G008500--Sobic004G047200 Sobic006G251600 Sobic006G251600 Sobic001G008500--Sobic006G251600 Sobic001G008500--Sobic003G008600 Sobic001G008500--Sobic001G115500 Sobic001G008500--Sobic009G071700 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic001G008500--Sobic002G423500 Sobic001G008500--Sobic001G371100
Octagon: transcription factors


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