Gene annotation
| Transcriptome id | Sobic.003G250900.1,Sobic.003G250900.2 |
|---|---|
| Synonym | Sb03g030700 |
| Functional annotation | AAA-type ATPase family protein, putative, expressed |
| UniProt | A0A1W0VYV8 , A0A1W0VYU9 |
| Pfam | PF00004 PF13771 PF00004 |
| Panther DB | PTHR23069 PTHR23069:SF6 |
| NCBI CDD | KOG0732; AAA+-type ATPase containing the bromodomain |
| KEGG Orthology | - |
| Gene Ontology | GO:0005524; ATP binding |
Orthologs (automatic annotation)
| TAIR | AT3G15120 : P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g47800.1 : AAA-type ATPase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a028112 |
| Brachypodium | KQK09118 , KQK09117 |
| Barley | HORVU3Hr1G061240.4 , HORVU3Hr1G061240.2 , HORVU3Hr1G061240.3 , HORVU3Hr1G061240.1 |
| Wheat | TraesCS3B02G272900 , TraesCS3D02G245000 , TraesCS3D02G245000 , TraesCS3A02G246500 , TraesCS3A02G246500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G437400 | guanine nucleotide exchange family protein, putative, expressed | K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein |
| 2 | Sobic.002G150800 | WD domain, G-beta repeat domain containing protein, expressed | K16547: protein NEDD1 |
| 3 | Sobic.001G143600 | pattern formation protein EMB30, putative, expressed | K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 |
| 4 | Sobic.003G314700 | expressed protein | - |
| 5 | Sobic.010G138900 | cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed | K11991: tRNA(adenine34) deaminase |
| 6 | Sobic.009G049200 | Spc97 / Spc98 family protein, putative, expressed | K16571: TUBGCP4, gamma-tubulin complex component 4 |
| 7 | Sobic.006G265600 | oligosaccharyl transferase, putative, expressed | K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase |
| 8 | Sobic.002G051800 | BTBT2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed | - |
| 9 | Sobic.006G280100 | SET domain containing protein, expressed | - |
| 10 | Sobic.006G033101 | - | K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1 |
| 11 | Sobic.010G188000 | elongation factor, putative, expressed | K12852: 116 kDa U5 small nuclear ribonucleoprotein component |
| 12 | Sobic.002G119600 | histone-lysine N-methyltransferase, putative, expressed | K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT |
| 13 | Sobic.003G334700 | HEAT, putative, expressed | K16803: CKAP5, cytoskeleton-associated protein 5 |
| 14 | Sobic.008G092800 | expressed protein | - |
| 15 | Sobic.009G118900 | expressed protein | - |
| 16 | Sobic.010G262100 | expressed protein | - |
| 17 | Sobic.001G451300 | NUP155, putative, expressed | K14312: NUP155, NUP170, nuclear pore complex protein Nup155 |
| 18 | Sobic.002G412700 | histone-arginine methyltransferase CARM1, putative, expressed | K05931: CARM1, type I protein arginine methyltransferase |
| 19 | Sobic.004G038100 | expressed protein | K14303: NUP160, nuclear pore complex protein Nup160 |
| 20 | Sobic.006G181800 | gamma-tubulin complex component 6, putative, expressed | K16573: TUBGCP6, gamma-tubulin complex component 6 |
Gene co-expression network
Octagon: transcription factors
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