Gene annotation
Transcriptome id Sobic.002G380600.1
Synonym Sb02g039750
Functional annotation transcription elongation factor SPT4 homolog 1, putative, expressed
UniProt C5X2I5
Pfam PF06093
Panther DB PTHR12882 PTHR12882:SF1
NCBI CDD KOG3490; Transcription elongation factor SPT4
KEGG Orthology K15171; SUPT4H1, transcription elongation factor SPT4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08565 : Transcription initiation Spt4-like protein
RAP-DB (Rice) LOC_Os07g43060.2 : transcription elongation factor SPT4 homolog 1, putative, expressed
MaizeGDB (Corn) Zm00025a015242
Brachypodium KQK15238
Barley HORVU2Hr1G029620.1
Wheat TraesCS2B02G188500 , TraesCS2D02G169600 , TraesCS2A02G162600 , TraesCS2A02G162600
Populus -


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cDNA sequences
Sobic.002G380600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G056100 expressed protein -
2 Sobic.003G272300 RNA polymerase II transcriptional coactivator KELP, putative, expressed -
3 Sobic.006G160200 MSP domain containing protein, expressed -
4 Sobic.004G190600 SET, putative, expressed K11290: SET, TAF1, template-activating factor I
5 Sobic.002G289800 HMG1/2, putative, expressed -
6 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
7 Sobic.001G300400 expansin precursor, putative, expressed -
8 Sobic.006G183600 IQ calmodulin-binding motif family protein, putative, expressed -
9 Sobic.001G172800 RNA recognition motif containing protein, putative, expressed K09564: peptidyl-prolyl isomerase E (cyclophilin E)
10 Sobic.008G070700 leafbladeless1, putative, expressed -
11 Sobic.002G380700 expressed protein -
12 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
13 Sobic.003G382100 PHD finger protein, putative, expressed -
14 Sobic.004G205300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
15 Sobic.001G158300 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
16 Sobic.007G096200 WD-40 repeat protein family, putative, expressed -
17 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
18 Sobic.001G477900 expressed protein -
19 Sobic.001G289900 AT hook motif domain containing protein, expressed -
20 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -


Gene co-expression network
sample Sobic002G380600 Sobic002G380600 Sobic006G056100 Sobic006G056100 Sobic002G380600--Sobic006G056100 Sobic003G272300 Sobic003G272300 Sobic002G380600--Sobic003G272300 Sobic006G160200 Sobic006G160200 Sobic002G380600--Sobic006G160200 Sobic004G190600 Sobic004G190600 Sobic002G380600--Sobic004G190600 Sobic002G289800 Sobic002G289800 Sobic002G380600--Sobic002G289800 Sobic001G440900 Sobic001G440900 Sobic002G380600--Sobic001G440900 Sobic001G300400 Sobic001G300400 Sobic002G380600--Sobic001G300400 Sobic006G183600 Sobic006G183600 Sobic002G380600--Sobic006G183600 Sobic001G172800 Sobic001G172800 Sobic002G380600--Sobic001G172800 Sobic006G155900 Sobic006G155900 Sobic006G056100--Sobic006G155900 Sobic004G205300 Sobic004G205300 Sobic006G056100--Sobic004G205300 Sobic010G202100 Sobic010G202100 Sobic006G056100--Sobic010G202100 Sobic003G047200 Sobic003G047200 Sobic006G056100--Sobic003G047200 Sobic008G114500 Sobic008G114500 Sobic006G056100--Sobic008G114500 Sobic001G098900 Sobic001G098900 Sobic006G056100--Sobic001G098900 Sobic009G190400 Sobic009G190400 Sobic006G056100--Sobic009G190400 Sobic001G494300 Sobic001G494300 Sobic006G056100--Sobic001G494300 Sobic006G056100--Sobic002G380600 Sobic010G079800 Sobic010G079800 Sobic003G272300--Sobic010G079800 Sobic003G382100 Sobic003G382100 Sobic003G272300--Sobic003G382100 Sobic006G248900 Sobic006G248900 Sobic003G272300--Sobic006G248900 Sobic003G272300--Sobic002G380600 Sobic007G153700 Sobic007G153700 Sobic003G272300--Sobic007G153700 Sobic007G050300 Sobic007G050300 Sobic003G272300--Sobic007G050300 Sobic004G206300 Sobic004G206300 Sobic003G272300--Sobic004G206300 Sobic004G027000 Sobic004G027000 Sobic003G272300--Sobic004G027000 Sobic003G098900 Sobic003G098900 Sobic003G272300--Sobic003G098900 Sobic006G160200--Sobic006G183600 Sobic002G284100 Sobic002G284100 Sobic006G160200--Sobic002G284100 Sobic004G267600 Sobic004G267600 Sobic006G160200--Sobic004G267600 Sobic005G062600 Sobic005G062600 Sobic006G160200--Sobic005G062600 Sobic001G487200 Sobic001G487200 Sobic006G160200--Sobic001G487200 Sobic009G172950 Sobic009G172950 Sobic006G160200--Sobic009G172950 Sobic001G369800 Sobic001G369800 Sobic006G160200--Sobic001G369800 Sobic001G540700 Sobic001G540700 Sobic006G160200--Sobic001G540700 Sobic006G272800 Sobic006G272800 Sobic006G160200--Sobic006G272800 Sobic001G235700 Sobic001G235700 Sobic004G190600--Sobic001G235700 Sobic002G303800 Sobic002G303800 Sobic004G190600--Sobic002G303800 Sobic004G190600--Sobic001G440900 Sobic004G208100 Sobic004G208100 Sobic004G190600--Sobic004G208100 Sobic001G081700 Sobic001G081700 Sobic004G190600--Sobic001G081700 Sobic010G032700 Sobic010G032700 Sobic004G190600--Sobic010G032700 Sobic010G054600 Sobic010G054600 Sobic004G190600--Sobic010G054600 Sobic001G146900 Sobic001G146900 Sobic004G190600--Sobic001G146900 Sobic001G371100 Sobic001G371100 Sobic004G190600--Sobic001G371100 Sobic001G289900 Sobic001G289900 Sobic002G289800--Sobic001G289900 Sobic007G017700 Sobic007G017700 Sobic002G289800--Sobic007G017700 Sobic003G316601 Sobic003G316601 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic004G327600 Sobic004G327600 Sobic002G289800--Sobic004G327600 Sobic007G132900 Sobic007G132900 Sobic002G289800--Sobic007G132900 Sobic010G222100 Sobic010G222100 Sobic002G289800--Sobic010G222100 Sobic002G289800--Sobic001G300400 Sobic006G081800 Sobic006G081800 Sobic002G289800--Sobic006G081800 Sobic002G351100 Sobic002G351100 Sobic001G440900--Sobic002G351100 Sobic001G440900--Sobic001G300400 Sobic010G001800 Sobic010G001800 Sobic001G440900--Sobic010G001800 Sobic001G440900--Sobic001G289900 Sobic001G440900--Sobic004G327600 Sobic001G440900--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic001G440900--Sobic001G107300 Sobic001G440900--Sobic002G289800 Sobic001G440900--Sobic007G153700 Sobic001G300400--Sobic002G351100 Sobic001G300400--Sobic001G289900 Sobic006G236800 Sobic006G236800 Sobic001G300400--Sobic006G236800 Sobic003G297200 Sobic003G297200 Sobic001G300400--Sobic003G297200 Sobic004G047100 Sobic004G047100 Sobic001G300400--Sobic004G047100 Sobic001G300400--Sobic002G289800 Sobic002G426800 Sobic002G426800 Sobic001G300400--Sobic002G426800 Sobic003G102000 Sobic003G102000 Sobic001G300400--Sobic003G102000 Sobic001G091500 Sobic001G091500 Sobic001G300400--Sobic001G091500 Sobic006G183600--Sobic006G160200 Sobic002G302600 Sobic002G302600 Sobic006G183600--Sobic002G302600 Sobic003G240100 Sobic003G240100 Sobic006G183600--Sobic003G240100 Sobic006G183600--Sobic001G300400 Sobic002G353200 Sobic002G353200 Sobic006G183600--Sobic002G353200 Sobic006G183600--Sobic002G284100 Sobic006G183600--Sobic001G487200 Sobic006G183600--Sobic001G540700 Sobic006G267800 Sobic006G267800 Sobic006G183600--Sobic006G267800 Sobic002G005700 Sobic002G005700 Sobic001G172800--Sobic002G005700 Sobic010G094500 Sobic010G094500 Sobic001G172800--Sobic010G094500 Sobic007G184400 Sobic007G184400 Sobic001G172800--Sobic007G184400 Sobic002G199100 Sobic002G199100 Sobic001G172800--Sobic002G199100 Sobic004G244800 Sobic004G244800 Sobic001G172800--Sobic004G244800 Sobic007G216600 Sobic007G216600 Sobic001G172800--Sobic007G216600 Sobic009G225900 Sobic009G225900 Sobic001G172800--Sobic009G225900 Sobic002G273100 Sobic002G273100 Sobic001G172800--Sobic002G273100 Sobic006G212000 Sobic006G212000 Sobic001G172800--Sobic006G212000
Octagon: transcription factors


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