Gene annotation
Transcriptome id Sobic.002G380700.1
Synonym Sb02g039760
Functional annotation expressed protein
UniProt C5X2I6
Pfam PF13266
Panther DB PTHR31132 PTHR31132:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G35780 : -
RAP-DB (Rice) LOC_Os07g43070.1 : expressed protein
MaizeGDB (Corn) Zm00025a048805 , Zm00025a015243
Brachypodium KQK15239 , KQK21458 , KQK21457
Barley HORVU2Hr1G029600.7 , HORVU2Hr1G029600.6 , HORVU2Hr1G029600.5 , HORVU2Hr1G029600.4 , HORVU2Hr1G029600.3 , HORVU2Hr1G029600.2 , HORVU2Hr1G029600.1
Wheat TraesCS2D02G169300 , TraesCS2D02G169300 , TraesCS2B02G188200 , TraesCS2B02G188200 , TraesCS2A02G162100 , TraesCS2A02G162100
Populus -


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cDNA sequences
Sobic.002G380700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G130000 STE_MEKK_ste11_MAP3K.21 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
2 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
3 Sobic.001G427400 AAA-type ATPase family protein, putative, expressed K11269: CTF18, chromosome transmission fidelity protein 18
4 Sobic.004G161400 protein binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
5 Sobic.004G198200 expressed protein -
6 Sobic.002G394200 expressed protein K15711: SMARCA3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3
7 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
8 Sobic.004G237300 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
9 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
10 Sobic.005G056800 FHA domain containing protein, putative, expressed -
11 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
12 Sobic.007G019600 expressed protein -
13 Sobic.006G160200 MSP domain containing protein, expressed -
14 Sobic.003G047200 expressed protein -
15 Sobic.006G201300 expressed protein -
16 Sobic.001G331100 expressed protein -
17 Sobic.010G202100 expressed protein -
18 Sobic.007G113900 reticulon domain containing protein, putative, expressed -
19 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
20 Sobic.010G215300 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase


Gene co-expression network
sample Sobic002G380700 Sobic002G380700 Sobic007G130000 Sobic007G130000 Sobic002G380700--Sobic007G130000 Sobic001G494300 Sobic001G494300 Sobic002G380700--Sobic001G494300 Sobic001G427400 Sobic001G427400 Sobic002G380700--Sobic001G427400 Sobic004G161400 Sobic004G161400 Sobic002G380700--Sobic004G161400 Sobic004G198200 Sobic004G198200 Sobic002G380700--Sobic004G198200 Sobic002G394200 Sobic002G394200 Sobic002G380700--Sobic002G394200 Sobic006G155900 Sobic006G155900 Sobic002G380700--Sobic006G155900 Sobic004G237300 Sobic004G237300 Sobic002G380700--Sobic004G237300 Sobic002G035500 Sobic002G035500 Sobic002G380700--Sobic002G035500 Sobic007G130000--Sobic004G198200 Sobic007G130000--Sobic001G427400 Sobic008G020500 Sobic008G020500 Sobic007G130000--Sobic008G020500 Sobic005G056800 Sobic005G056800 Sobic007G130000--Sobic005G056800 Sobic007G130000--Sobic001G494300 Sobic007G130000--Sobic006G155900 Sobic003G040100 Sobic003G040100 Sobic007G130000--Sobic003G040100 Sobic007G130000--Sobic002G380700 Sobic001G284900 Sobic001G284900 Sobic007G130000--Sobic001G284900 Sobic001G494300--Sobic006G155900 Sobic001G494300--Sobic008G020500 Sobic001G494300--Sobic004G198200 Sobic001G494300--Sobic003G040100 Sobic007G019600 Sobic007G019600 Sobic001G494300--Sobic007G019600 Sobic001G494300--Sobic001G427400 Sobic003G047200 Sobic003G047200 Sobic001G494300--Sobic003G047200 Sobic009G163700 Sobic009G163700 Sobic001G494300--Sobic009G163700 Sobic001G494300--Sobic007G130000 Sobic008G147500 Sobic008G147500 Sobic001G427400--Sobic008G147500 Sobic001G427400--Sobic001G494300 Sobic003G414400 Sobic003G414400 Sobic001G427400--Sobic003G414400 Sobic001G427400--Sobic007G130000 Sobic001G427400--Sobic004G198200 Sobic001G427400--Sobic001G284900 Sobic001G295400 Sobic001G295400 Sobic001G427400--Sobic001G295400 Sobic006G112800 Sobic006G112800 Sobic001G427400--Sobic006G112800 Sobic010G067900 Sobic010G067900 Sobic001G427400--Sobic010G067900 Sobic010G209800 Sobic010G209800 Sobic004G161400--Sobic010G209800 Sobic010G234900 Sobic010G234900 Sobic004G161400--Sobic010G234900 Sobic004G161400--Sobic002G380700 Sobic004G161400--Sobic007G130000 Sobic003G377200 Sobic003G377200 Sobic004G161400--Sobic003G377200 Sobic003G095200 Sobic003G095200 Sobic004G161400--Sobic003G095200 Sobic009G203400 Sobic009G203400 Sobic004G161400--Sobic009G203400 Sobic007G039100 Sobic007G039100 Sobic004G161400--Sobic007G039100 Sobic009G136600 Sobic009G136600 Sobic004G161400--Sobic009G136600 Sobic004G198200--Sobic008G020500 Sobic004G198200--Sobic006G155900 Sobic009G190400 Sobic009G190400 Sobic004G198200--Sobic009G190400 Sobic004G198200--Sobic003G040100 Sobic001G070200 Sobic001G070200 Sobic004G198200--Sobic001G070200 Sobic004G198200--Sobic007G130000 Sobic004G198200--Sobic001G494300 Sobic004G198200--Sobic003G414400 Sobic004G198200--Sobic001G427400 Sobic009G025400 Sobic009G025400 Sobic002G394200--Sobic009G025400 Sobic004G108400 Sobic004G108400 Sobic002G394200--Sobic004G108400 Sobic002G420000 Sobic002G420000 Sobic002G394200--Sobic002G420000 Sobic007G008300 Sobic007G008300 Sobic002G394200--Sobic007G008300 Sobic009G257900 Sobic009G257900 Sobic002G394200--Sobic009G257900 Sobic002G394200--Sobic001G295400 Sobic002G394200--Sobic001G494300 Sobic002G394200--Sobic006G112800 Sobic002G394200--Sobic005G056800 Sobic006G155900--Sobic009G190400 Sobic006G155900--Sobic004G198200 Sobic006G155900--Sobic003G040100 Sobic006G155900--Sobic001G494300 Sobic006G155900--Sobic008G020500 Sobic006G155900--Sobic003G047200 Sobic006G155900--Sobic003G414400 Sobic006G155900--Sobic001G070200 Sobic001G331100 Sobic001G331100 Sobic006G155900--Sobic001G331100 Sobic004G237300--Sobic007G019600 Sobic004G237300--Sobic002G035500 Sobic004G237300--Sobic001G494300 Sobic004G237300--Sobic003G414400 Sobic004G237300--Sobic008G147500 Sobic004G237300--Sobic006G155900 Sobic004G237300--Sobic003G047200 Sobic003G282600 Sobic003G282600 Sobic004G237300--Sobic003G282600 Sobic010G215300 Sobic010G215300 Sobic004G237300--Sobic010G215300 Sobic002G035500--Sobic007G019600 Sobic005G129600 Sobic005G129600 Sobic002G035500--Sobic005G129600 Sobic004G113900 Sobic004G113900 Sobic002G035500--Sobic004G113900 Sobic002G035500--Sobic010G209800 Sobic004G191600 Sobic004G191600 Sobic002G035500--Sobic004G191600 Sobic002G035500--Sobic003G282600 Sobic002G035500--Sobic009G257900 Sobic002G035500--Sobic004G237300 Sobic007G162000 Sobic007G162000 Sobic002G035500--Sobic007G162000
Octagon: transcription factors


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