Gene annotation
Transcriptome id Sobic.006G080000.1
Synonym Sb06g016670
Functional annotation protein of unknown function domain containing protein, expressed
UniProt C5YGG6
Pfam PF01918
Panther DB PTHR13516 PTHR13516:SF6
NCBI CDD KOG2567; Uncharacterized conserved protein
KEGG Orthology K14525; ribonucleases P/MRP protein subunit RPP25
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G20220 : Alba DNA/RNA-binding protein
RAP-DB (Rice) LOC_Os04g34940.1 : protein of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011412
Brachypodium KQJ82625
Barley HORVU2Hr1G074850.5 , HORVU2Hr1G074850.7 , HORVU2Hr1G074850.1 , HORVU2Hr1G074850.3 , HORVU2Hr1G074850.8 , HORVU2Hr1G074850.9 , HORVU2Hr1G074850.10
Wheat TraesCS2B02G317800 , TraesCS2B02G317800 , TraesCS2D02G300500 , TraesCS2A02G302000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G222800 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
2 Sobic.001G448700 "TUD1(Ortholog in rice:Hu et al., 2013)"(PubMedID : 31659845)@U-box domain containing protein, expressed -
3 Sobic.010G060000 - -
4 Sobic.008G081150 - -
5 Sobic.002G290300 zinc finger Ran-binding domain-containing protein 2, putative, expressed -
6 Sobic.004G078300 expressed protein -
7 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
8 Sobic.009G094800 sugar porter, putative, expressed -
9 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
10 Sobic.005G194200 EARLY flowering protein, putative, expressed -
11 Sobic.009G105200 PPR repeat containing protein, expressed -
12 Sobic.007G222900 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
13 Sobic.005G033300 microfibrillar-associated protein 1, putative, expressed K13110: microfibrillar-associated protein 1
14 Sobic.001G324400 thymidine kinase, putative, expressed K00857: tdk, thymidine kinase
15 Sobic.002G082100 serine/threonine-protein kinase, putative, expressed -
16 Sobic.001G222900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
17 Sobic.006G269400 expressed protein -
18 Sobic.010G143200 - -
19 Sobic.007G174600 glutamate synthase, chloroplast precursor, putative, expressed -
20 Sobic.001G280400 ankyrin repeat domain-containing protein 28, putative, expressed -


Gene co-expression network
sample Sobic006G080000 Sobic006G080000 Sobic007G222800 Sobic007G222800 Sobic006G080000--Sobic007G222800 Sobic001G448700 Sobic001G448700 Sobic006G080000--Sobic001G448700 Sobic010G060000 Sobic010G060000 Sobic006G080000--Sobic010G060000 Sobic008G081150 Sobic008G081150 Sobic006G080000--Sobic008G081150 Sobic002G290300 Sobic002G290300 Sobic006G080000--Sobic002G290300 Sobic004G078300 Sobic004G078300 Sobic006G080000--Sobic004G078300 Sobic004G117800 Sobic004G117800 Sobic006G080000--Sobic004G117800 Sobic009G094800 Sobic009G094800 Sobic006G080000--Sobic009G094800 Sobic010G171100 Sobic010G171100 Sobic006G080000--Sobic010G171100 Sobic007G222800--Sobic006G080000 Sobic005G033300 Sobic005G033300 Sobic007G222800--Sobic005G033300 Sobic007G096200 Sobic007G096200 Sobic007G222800--Sobic007G096200 Sobic002G140900 Sobic002G140900 Sobic007G222800--Sobic002G140900 Sobic004G134500 Sobic004G134500 Sobic007G222800--Sobic004G134500 Sobic001G199900 Sobic001G199900 Sobic007G222800--Sobic001G199900 Sobic005G164500 Sobic005G164500 Sobic007G222800--Sobic005G164500 Sobic007G222800--Sobic010G171100 Sobic009G105800 Sobic009G105800 Sobic007G222800--Sobic009G105800 Sobic006G047300 Sobic006G047300 Sobic001G448700--Sobic006G047300 Sobic001G161400 Sobic001G161400 Sobic001G448700--Sobic001G161400 Sobic001G202500 Sobic001G202500 Sobic001G448700--Sobic001G202500 Sobic004G301200 Sobic004G301200 Sobic001G448700--Sobic004G301200 Sobic003G209300 Sobic003G209300 Sobic001G448700--Sobic003G209300 Sobic009G105200 Sobic009G105200 Sobic001G448700--Sobic009G105200 Sobic003G210900 Sobic003G210900 Sobic001G448700--Sobic003G210900 Sobic009G004800 Sobic009G004800 Sobic001G448700--Sobic009G004800 Sobic006G223300 Sobic006G223300 Sobic001G448700--Sobic006G223300 Sobic007G136600 Sobic007G136600 Sobic010G060000--Sobic007G136600 Sobic001G077100 Sobic001G077100 Sobic010G060000--Sobic001G077100 Sobic002G104000 Sobic002G104000 Sobic010G060000--Sobic002G104000 Sobic004G018500 Sobic004G018500 Sobic010G060000--Sobic004G018500 Sobic002G226100 Sobic002G226100 Sobic010G060000--Sobic002G226100 Sobic009G206400 Sobic009G206400 Sobic010G060000--Sobic009G206400 Sobic006G269400 Sobic006G269400 Sobic010G060000--Sobic006G269400 Sobic003G421400 Sobic003G421400 Sobic010G060000--Sobic003G421400 Sobic009G138900 Sobic009G138900 Sobic010G060000--Sobic009G138900 Sobic003G396300 Sobic003G396300 Sobic008G081150--Sobic003G396300 Sobic008G081150--Sobic009G094800 Sobic008G152200 Sobic008G152200 Sobic008G081150--Sobic008G152200 Sobic007G222900 Sobic007G222900 Sobic008G081150--Sobic007G222900 Sobic007G071000 Sobic007G071000 Sobic008G081150--Sobic007G071000 Sobic004G010101 Sobic004G010101 Sobic008G081150--Sobic004G010101 Sobic006G122900 Sobic006G122900 Sobic008G081150--Sobic006G122900 Sobic009G205600 Sobic009G205600 Sobic008G081150--Sobic009G205600 Sobic004G096300 Sobic004G096300 Sobic008G081150--Sobic004G096300 Sobic002G290300--Sobic007G222900 Sobic002G040800 Sobic002G040800 Sobic002G290300--Sobic002G040800 Sobic002G290300--Sobic010G171100 Sobic001G107900 Sobic001G107900 Sobic002G290300--Sobic001G107900 Sobic010G228700 Sobic010G228700 Sobic002G290300--Sobic010G228700 Sobic004G237100 Sobic004G237100 Sobic002G290300--Sobic004G237100 Sobic002G290300--Sobic009G094800 Sobic002G290300--Sobic004G010101 Sobic005G084400 Sobic005G084400 Sobic002G290300--Sobic005G084400 Sobic004G077600 Sobic004G077600 Sobic004G078300--Sobic004G077600 Sobic003G219400 Sobic003G219400 Sobic004G078300--Sobic003G219400 Sobic003G218700 Sobic003G218700 Sobic004G078300--Sobic003G218700 Sobic001G274700 Sobic001G274700 Sobic004G078300--Sobic001G274700 Sobic004G078300--Sobic006G080000 Sobic003G045200 Sobic003G045200 Sobic004G078300--Sobic003G045200 Sobic002G364000 Sobic002G364000 Sobic004G078300--Sobic002G364000 Sobic010G080600 Sobic010G080600 Sobic004G078300--Sobic010G080600 Sobic004G031400 Sobic004G031400 Sobic004G078300--Sobic004G031400 Sobic006G170200 Sobic006G170200 Sobic004G117800--Sobic006G170200 Sobic008G051100 Sobic008G051100 Sobic004G117800--Sobic008G051100 Sobic009G029700 Sobic009G029700 Sobic004G117800--Sobic009G029700 Sobic001G280400 Sobic001G280400 Sobic004G117800--Sobic001G280400 Sobic004G136500 Sobic004G136500 Sobic004G117800--Sobic004G136500 Sobic001G008800 Sobic001G008800 Sobic004G117800--Sobic001G008800 Sobic001G132900 Sobic001G132900 Sobic004G117800--Sobic001G132900 Sobic002G058700 Sobic002G058700 Sobic004G117800--Sobic002G058700 Sobic003G058900 Sobic003G058900 Sobic004G117800--Sobic003G058900 Sobic009G094800--Sobic002G040800 Sobic002G174900 Sobic002G174900 Sobic009G094800--Sobic002G174900 Sobic003G308700 Sobic003G308700 Sobic009G094800--Sobic003G308700 Sobic001G429300 Sobic001G429300 Sobic009G094800--Sobic001G429300 Sobic007G062500 Sobic007G062500 Sobic009G094800--Sobic007G062500 Sobic009G094800--Sobic008G081150 Sobic001G427500 Sobic001G427500 Sobic009G094800--Sobic001G427500 Sobic006G028300 Sobic006G028300 Sobic009G094800--Sobic006G028300 Sobic001G031300 Sobic001G031300 Sobic009G094800--Sobic001G031300 Sobic004G095300 Sobic004G095300 Sobic010G171100--Sobic004G095300 Sobic003G122500 Sobic003G122500 Sobic010G171100--Sobic003G122500 Sobic003G123000 Sobic003G123000 Sobic010G171100--Sobic003G123000 Sobic010G171100--Sobic010G228700 Sobic005G220000 Sobic005G220000 Sobic010G171100--Sobic005G220000 Sobic010G085200 Sobic010G085200 Sobic010G171100--Sobic010G085200 Sobic001G088100 Sobic001G088100 Sobic010G171100--Sobic001G088100 Sobic010G171100--Sobic002G058700 Sobic007G084100 Sobic007G084100 Sobic010G171100--Sobic007G084100
Octagon: transcription factors


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